PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX77253.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 369aa MW: 39428.1 Da PI: 6.8857

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX77253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	84	108	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ RDX77253.1 84 FKTKLCCKFRA-GTCPYITNCNFAHS 108 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	159	184	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ RDX77253.1 159 YKGRHCKKFYTEEGCPYGDSCTFLHD 184 78888********************7 PP
3	zf-CCCH	42.8	8.4e-14	249	274	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg RDX77253.1 249 WKTRICNKWEMTGYCPFGNKCHFAHG 274 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDYAREGNVV QIITGGDGGD SWSGDQADWA TEDEYRFWNN NNGDAETTPS NSNYEARSEP 60 PSKKSRNSQE GSSSRSKAIG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE ELRRPPPNWQ 120 EIVAAHEEEK AVMTEPREEF QIPTVGSSTF AGDMMQRSYK GRHCKKFYTE EGCPYGDSCT 180 FLHDEQSKNR ESVAISLGPG GYAGGSSGGG GGSGGGAGGG GSGGGGSSSG VGGASNAAGN 240 GPNSKPSNWK TRICNKWEMT GYCPFGNKCH FAHGATELHR YGGGLMEGES RDAASAVATD 300 TNKGVPSKAS ADNVVAAVTP VTHSDVYHIG VPSQRPSIVI QRPGQRTHHK WKGPDKISRI 360 YGDWIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDYAREGNVV QIITGGDGGD SWSGDQADWA TEDEYRFWNN NNGDAETTPS NSNYEARSEP  60
PSKKSRNSQE GSSSRSKAIG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE ELRRPPPNWQ  120
EIVAAHEEEK AVMTEPREEF QIPTVGSSTF AGDMMQRSYK GRHCKKFYTE EGCPYGDSCT  180
FLHDEQSKNR ESVAISLGPG GYAGGSSGGG GGSGGGAGGG GSGGGGSSSG VGGASNAAGN  240
GPNSKPSNWK TRICNKWEMT GYCPFGNKCH FAHGATELHR YGGGLMEGES RDAASAVATD  300
TNKGVPSKAS ADNVVAAVTP VTHSDVYHIG VPSQRPSIVI QRPGQRTHHK WKGPDKISRI  360
YGDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-116	C3H family protein