PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDX75143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27429.9 Da PI: 8.2157 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.8e-19 | 72 | 126 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q+e Le+ F+++ +++ e++++L+++lgL+ rq+ vWFqNrR+++k RDX75143.1 72 EKKKRLTSNQIELLERSFQEEIKLDPERKTKLSRELGLQPRQIAVWFQNRRTRWK 126 57788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.7 | 1.3e-37 | 72 | 163 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+k+lE+ y++Lk++yd +++e+++L++ev +L++ l+ RDX75143.1 72 EKKKRLTSNQIELLERSFQEEIKLDPERKTKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKHQYDVISNEKQKLQEEVMKLKAMLS 163 69**************************************************************************************8876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence |
MELKGRDLHK KVETDMDWHQ RTKLPLVPQP ESSLSFFYNY DNNVPYPVEV KQATLTETGQ 60 RSVPAMDNGN KEKKKRLTSN QIELLERSFQ EEIKLDPERK TKLSRELGLQ PRQIAVWFQN 120 RRTRWKAKHL EHLYDVLKHQ YDVISNEKQK LQEEVMKLKA MLSREQGFGT QTFGGYTEIS 180 GEETVESTSE GLRGSNKPRG KSNIEQVAAD QGYCSFTVED YSTVSLPHCH WPVVPF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 102 | KKKRLTSNQIELLERSFQEEIKLDPERKTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-43 | HD-ZIP family protein |