PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDX74387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 353aa MW: 40002.4 Da PI: 8.4395 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.3 | 1.3e-20 | 26 | 70 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA ELS+LCd+++ +++f+++gk RDX74387.1 26 KRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGK 70 689****************************************97 PP | |||||||
2 | HLH | 11.8 | 0.00045 | 75 | 112 | 10 | 49 |
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAve 49 r RR+++ + +++ +l P+ + ++Kl+ e L+k+ + RDX74387.1 75 RGRRSNLEEVIAKFAQLTPQeR---AKRKLETLEALKKTFK 112 99******************66...8888********9865 PP | |||||||
3 | K-box | 13.8 | 2.4e-06 | 127 | 187 | 17 | 71 |
K-box 17 lqqelakLkkeienLq.....reqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKne 71 ++q ++ L ++ + Lq + +R + + +++s +++L q+e+ L +sl++iR++K + RDX74387.1 127 SSQTIEDLSNQARLLQteiseTHKRLSHWTEFDKISsVEQLGQMENSLRESLNQIRTRKFN 187 5677777777777777666533445567899999863688*******************75 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence |
MIKVTVVVNY IIYLMRRMGR VKLKIKRLEN TNGRQATYAK RKNGIMKKAA ELSILCDIDI 60 ILLMFAPNGK PSICRGRRSN LEEVIAKFAQ LTPQERAKRK LETLEALKKT FKKLDHDVNI 120 QEFLGTSSQT IEDLSNQARL LQTEISETHK RLSHWTEFDK ISSVEQLGQM ENSLRESLNQ 180 IRTRKFNEMN IPFRMSAEQH LQPLSWIANG DSQNIVLPEE SSMFLHKDVE GSASSSFGSY 240 ASYLGSSIKT EMSNSGQENG VLSEMSSAAP MRLQLNGQFP YLPYNFNLLN NLKFQPTAEI 300 NPHENPVDYH VNGSFEAPRS GYDSNHHGWA STSGHCGVTM FDEQLYAQAS STE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03060.2 | 2e-84 | M-type_MADS family protein |