PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX68914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | ARF | ||||||||
Protein Properties | Length: 1007aa MW: 110890 Da PI: 6.8428 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1e-22 | 136 | 237 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ a+++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+ RDX68914.1 136 FCKQLTASDTSTHGGFSVPRRAADKMfpsldySLQPPA-QELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFV--RDEKQQLL 231 99*****************************9777766.49************************************************..5688889* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ RDX68914.1 232 LGIRRA 237 ***997 PP | |||||||
2 | Auxin_resp | 116.7 | 2e-38 | 263 | 346 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++gvsdld+vrW+nS Wr+L+ RDX68914.1 263 AAHAVANNSSFTVFYNPRASPSEFVIPLAKYYKAVYsHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQ 346 79********************************99899*******************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1007 aa Download sequence |
MATIAMKTQP DGAGAAVPNV GEGGEKKSIN PELWQACAGP LLNLPSPGTH VVYFPQGHSE 60 QVAASLKKDV DAQIPNYTNL PSKIPCLLHN VTLHADPDTD EVYAQMTLQP VPSFDTDALL 120 RSDISLRSSK PQPEFFCKQL TASDTSTHGG FSVPRRAADK MFPSLDYSLQ PPAQELVARD 180 LHDNVWRFRH IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV LFVRDEKQQL LLGIRRANKR 240 QPSNISSSVL SSDSMHIGVL AAAAHAVANN SSFTVFYNPR ASPSEFVIPL AKYYKAVYSH 300 HISPGMRFRM MFETEDSGTR RYMGTIIGVS DLDSVRWKNS LWRNLQVGWD ESIAEERRSR 360 VSVWEIEPVT APYFICPPPF FRSKRPRLPG MPDDESDFNN LFKSAVPWLG DDMCIKDPQA 420 LPGLSLVQWM NIQQNPALAS SVQPNYVPSM SGLILQNHPG ADITNQLGFS TPQISQSNDV 480 SVNAQNILQT SQQLDHIQKL PSTSSALGMV TQPLQQLGDI TQQPRNMTNQ TLPQNQVHTQ 540 LLNPQSLVLT NNFLQQQQSS IQNHQLHRSL SQNPPQKHQQ TTMGQNQRPN SFQSPMPDHL 600 NQQLQMSDNQ VRLQLLQQLQ QQQQTLLAQQ SALHQPAQIQ IQDQQRQLLD VAHNSSALTA 660 GQVPEIPPML QNSIPEANSI IHQIKMPTGQ KNIQFSHLSQ QPALLSEMSG RVGLPPTVTT 720 NPLSASAGSI LTGAGQSVIT DDAPSCSTSP STNNCVTALP PVISSQIPRS TTIGDDMAQS 780 AVTILSPSAL ETMSSNATLV NDVQPKYEVK PLNISKNQNQ GIVAPQTYLN GVVVQADYLD 840 SSSSTTSLCH FQSDTHMHQN NSPFSYNPQL MYCRDNSQNV EVQADARSNV PFGNNINGQM 900 GMPLNLDSLL TKGTVGLGKD LSNNFPSGGL LGDYENNRNV QPELSTSMVS QTFEVPDMTF 960 NSIDSTINGS SFLNRSPWDL PPPPPPPLPP PPPQQQQLQR MRTYTKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |