PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX68806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25820.5 Da PI: 10.0664 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65 | 7.7e-21 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks qvtfskRr g++KKA+EL++LC++e+a+++fs+ +k + + RDX68806.1 18 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSF 65 57789999*********************************9987655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MSKNKKSSLG RQKIPIEKIP KKSHLQVTFS KRRSGLFKKA SELCTLCGVE IAIVVFSPAD 60 KAFSFGHPEV ESLIDRYTTR NPPQESSAHH LVEAHRNANV RDLNMQLTQV FNHLEMEKKR 120 GEDLDHVRKA RQRQFWWESP ADELGLHELL QLKVSIEELK KNIEKHASKF MLEHSANMSS 180 SSSILPHNNG LGPSLGRYDA FDNKSAPGIT IAAPLPNAHY LAFRTSYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-57 | M-type_MADS family protein |