PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX68602.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 534aa MW: 58814.1 Da PI: 8.4035

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX68602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.1	7.4e-09	179	202	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + C++f + G C++G+rCkF H+ RDX68602.1 179 KDKVCNYFIQ-GNCSFGERCKFLHS 202 55789999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MVCARSGQFS NFWISVDLMA YTIFIFLPIA CSNQFPNSTS QNPRSTSSLP IAPSDKRHFQ 60 FDPLTFPRRE FLCFWNLRSM DVDGGNKRVY NRLGADAKQQ KVCFHWQAGK CNRHPCAFLH 120 SELPAAHANG TSSKRVYDNS GLSGPRRGPN FNNTWGRGGG RGGGGGRGGG RGVSVKVDKD 180 KVCNYFIQGN CSFGERCKFL HSWSIGDGFS LLTQLEGHQK AVSAIAFPSG SDKLYTGSTD 240 ETARIWDCQS GKFPFELVEK VRLILFLFVY TPLQCISVIN LGGEVGCMIS EGPWVFVGIP 300 NLVKAWNTQN LMELSLNGPV GQVYALVVNN DMLFAGTQDG SILAWKFNVV TNCFEPAASL 360 KGHSRSVVSL VVGANRLYSG SMDNTIRVWN LETLQCLQTL TEHTSVVMSV LCWDQFLLSC 420 SLDKTVKVWY ATESGNLEVT YTHNEEHGIL TLCGMHDSQG KPILLCACND NTVHLYDLPS 480 FAERGKILTK QEVRAMQIGP NGIFFTGDGT GEGIQTEVGT GKRQKKGAIK RVML

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MVCARSGQFS NFWISVDLMA YTIFIFLPIA CSNQFPNSTS QNPRSTSSLP IAPSDKRHFQ  60
FDPLTFPRRE FLCFWNLRSM DVDGGNKRVY NRLGADAKQQ KVCFHWQAGK CNRHPCAFLH  120
SELPAAHANG TSSKRVYDNS GLSGPRRGPN FNNTWGRGGG RGGGGGRGGG RGVSVKVDKD  180
KVCNYFIQGN CSFGERCKFL HSWSIGDGFS LLTQLEGHQK AVSAIAFPSG SDKLYTGSTD  240
ETARIWDCQS GKFPFELVEK VRLILFLFVY TPLQCISVIN LGGEVGCMIS EGPWVFVGIP  300
NLVKAWNTQN LMELSLNGPV GQVYALVVNN DMLFAGTQDG SILAWKFNVV TNCFEPAASL  360
KGHSRSVVSL VVGANRLYSG SMDNTIRVWN LETLQCLQTL TEHTSVVMSV LCWDQFLLSC  420
SLDKTVKVWY ATESGNLEVT YTHNEEHGIL TLCGMHDSQG KPILLCACND NTVHLYDLPS  480
FAERGKILTK QEVRAMQIGP NGIFFTGDGT GEGIQTEVGT GKRQKKGAIK RVML

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	167	RGGGRGGGGGR
2	158	166	GGGRGGGGG
3	159	167	GGGRGGGGG
4	161	171	RGGGRGGGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	0.0	C3H family protein