PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g989570.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 309aa MW: 34459.4 Da PI: 7.1189

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g989570.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.4	2.1e-24	88	131	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g989570.m01 88 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 131 69****************************************96 PP
2	K-box	48.1	5.1e-17	163	242	19	98
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl + ++K+el++++i l kk el e+n++Lr+++ Pd.00g989570.m01 163 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRAIETKEELIMSEIMALEKKGAELVEANNQLRQRM 242 34457888888888***************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MPHFLLSRYK INGGDRIYKL QVHLSLSICS GFLPSFPKRH REAAIFLSHS LSFSENTRTS 60 DPGTPQKGGM VKTMRKKIKI KKIDYLPARQ VTFSKRRRGI FKKAEELSVL CESEVAVVIF 120 SATGKLFDYS SSSTKDVVER YKAHTNGVEK SDEPSVELQL EIENHIRLTK ELEEKSRQLR 180 QMRGEDLEEL NIDELQKLEQ LVDASLGRAI ETKEELIMSE IMALEKKGAE LVEANNQLRQ 240 RMVMLSRGNI GPALTEPERL INNIGGGGEE GMSSESATNA TISSCSSGLS LSLEDDCSDV 300 TLALKLGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	6e-60	MIKC_MADS family protein