PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g989550.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 275aa MW: 29974.1 Da PI: 5.0286

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g989550.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75	5.9e-24	56	99	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr+gi+KKA ELSvLC+ +vav+ifs tgkl++yss Pd.00g989550.m01 56 ARQVTFSKRRTGIFKKAAELSVLCESKVAVVIFSATGKLFDYSS 99 69****************************************96 PP
2	K-box	40.3	1.4e-14	129	209	17	97
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ L ke+e+ +++R+++ edLe+L++ eLq+Leq ++ sl+++ ++K+el +++i l +k el e+n++Lr+ Pd.00g989550.m01 129 ENENHIGLSKELEEKSHQLRQMKAEDLEELDFDELQKLEQLVDASLSRVIETKEELRMTEITALERKGAELVEANNQLRQT 209 445555678888888899*************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MIRQAGPLAA AAISLSNSLN FSGHTKTSDL KLPNEGGILK MMRKKIKIKK IDCLPARQVT 60 FSKRRTGIFK KAAELSVLCE SKVAVVIFSA TGKLFDYSSS SIKDVIESYK AHKNGVEKSD 120 EPSVELQLEN ENHIGLSKEL EEKSHQLRQM KAEDLEELDF DELQKLEQLV DASLSRVIET 180 KEELRMTEIT ALERKGAELV EANNQLRQTM VMLSGGNTGP TLKDPESLSD KTGGGGEEEG 240 MSSESAISTT CNSALSLSLG DDSDDVTLSL KLGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-47	MIKC_MADS family protein