PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g989520.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 901aa MW: 100770 Da PI: 8.8011

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g989520.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.2	1.9e-22	67	110	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr g++KKA ELSvLC+ evav+ifs t+kl++yss Pd.00g989520.m01 67 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATDKLFDYSS 110 69****************************************96 PP
2	K-box	46.9	1.2e-16	133	199	33	99
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 r++R+++GedL+ L+l eL +Leq +e sl ++ ++K+el++++i l kk el e+n++Lr+k++ Pd.00g989520.m01 133 RQLRQMKGEDLKGLNLDELLKLEQLVEASLGRVIETKEELIMSEIMALEKKGAELAEANNQLRQKMQ 199 789*************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence
MLRFALSRYK INGGDCMHQR QGASVPVDLL SFSGQTKTSD RAETPTREMV KMMREKIKIK 60 KIDYLPARQV TFSKRRRGLF KKAAELSVLC ESEVAVVIFS ATDKLFDYSS SSTKDVIERY 120 KAHTGGEVEE KSRQLRQMKG EDLKGLNLDE LLKLEQLVEA SLGRVIETKE ELIMSEIMAL 180 EKKGAELAEA NNQLRQKMQM LSGGNTGPAF VEPETLITNV GGGGEEDGMS SESALIATST 240 SCNSAVSLSL EDDCSDVTLS LKLGLPYVTA HANLIRSCLL DWGLVPIQSQ RVPLISSSLQ 300 TSIEGGTKSL VNKLKVIRDY VSQWPILVRV LYRVLVDKFL APFRTISNVR CSDQRSWKND 360 HGEEFLFVSS LGFSNQNSNE PMKLHKDYYG YYYPNQSQRA ALAGLLVVLF PAFFPNLFGP 420 LGRASPSIFS EWNAPKARHL HLLNPALLLQ SSVEQQSKLW SPLPNQGWKR CLEESKSLSL 480 TPKGSTGYIQ VFLDGGLNQQ KMGICDAVAV AKILNATLVV PHLEVNPVWQ DSSSFEEIFD 540 LDHFIEVLSD EVSIVKGLPS EFSWSTREYY ATGIRITRIK TAPVHASSDW YLENVLPILQ 600 RYGVAAISPF SHRLTFENLP KNIQHLRCKV NFQALAFVPH IRELGETLVN RLRYPPNRNQ 660 GAASDSQDGT NQIEKQGAGK FVVLHLRFDK DMAAHSACDF GGGKAEKLAL AKYRQVIWQG 720 RVLKSQFTDE ELRNQGRCPL TPEEIGLLLA ALGFNNSTRL YLASHMVYGG EARISTLRRL 780 FPLMEDKKSL ASTEERAKVE GKASLLAAVD YYVSMQSDIF ISASPGNMHN ALVGHRAYMD 840 LKTIRPSMSL LGKLFVNKSM EWSEFQHAVL DGHKSRQGQI RLRKEKQSIY TYPAPDCMCQ 900 A

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence

MLRFALSRYK INGGDCMHQR QGASVPVDLL SFSGQTKTSD RAETPTREMV KMMREKIKIK  60
KIDYLPARQV TFSKRRRGLF KKAAELSVLC ESEVAVVIFS ATDKLFDYSS SSTKDVIERY  120
KAHTGGEVEE KSRQLRQMKG EDLKGLNLDE LLKLEQLVEA SLGRVIETKE ELIMSEIMAL  180
EKKGAELAEA NNQLRQKMQM LSGGNTGPAF VEPETLITNV GGGGEEDGMS SESALIATST  240
SCNSAVSLSL EDDCSDVTLS LKLGLPYVTA HANLIRSCLL DWGLVPIQSQ RVPLISSSLQ  300
TSIEGGTKSL VNKLKVIRDY VSQWPILVRV LYRVLVDKFL APFRTISNVR CSDQRSWKND  360
HGEEFLFVSS LGFSNQNSNE PMKLHKDYYG YYYPNQSQRA ALAGLLVVLF PAFFPNLFGP  420
LGRASPSIFS EWNAPKARHL HLLNPALLLQ SSVEQQSKLW SPLPNQGWKR CLEESKSLSL  480
TPKGSTGYIQ VFLDGGLNQQ KMGICDAVAV AKILNATLVV PHLEVNPVWQ DSSSFEEIFD  540
LDHFIEVLSD EVSIVKGLPS EFSWSTREYY ATGIRITRIK TAPVHASSDW YLENVLPILQ  600
RYGVAAISPF SHRLTFENLP KNIQHLRCKV NFQALAFVPH IRELGETLVN RLRYPPNRNQ  660
GAASDSQDGT NQIEKQGAGK FVVLHLRFDK DMAAHSACDF GGGKAEKLAL AKYRQVIWQG  720
RVLKSQFTDE ELRNQGRCPL TPEEIGLLLA ALGFNNSTRL YLASHMVYGG EARISTLRRL  780
FPLMEDKKSL ASTEERAKVE GKASLLAAVD YYVSMQSDIF ISASPGNMHN ALVGHRAYMD  840
LKTIRPSMSL LGKLFVNKSM EWSEFQHAVL DGHKSRQGQI RLRKEKQSIY TYPAPDCMCQ  900
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	5e-31	MIKC_MADS family protein