PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g984650.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 511aa MW: 57575.8 Da PI: 8.2692

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g984650.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.7	1.1e-11	359	407	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50 i+ + nr vtf kR++ ++ K E+ +LC++ ++ +++ s+ k+ ++ Pd.00g984650.m01 359 ISHEPNRRVTFKKRKANLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 407 88899*************************9998777751567788877 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MIAGFLQIDT FSYEHANEVF NLLSQMQRLG VKPSTFTFSI ILRACKSVEA FEYGKQVHTQ 60 VCKYNLQGDE FIGSGLIDFY SSLGLFEDAL KCFNLTPRLD IVSWTSMVAA YIQNGETESA 120 FDLFYKLLAS GKKPDEFIIS SMLGACANLA AARSGEQIQG YAVKAGVGKF TIVQNSQICM 180 YAKSGDIDSA NLTFTETENP DVVSWSVMIC SKAQHGCARE ALELFELMKN CGIAPNHITF 240 LGVLTACSHG GLVEEGLRFA SSVHQFGLIC TPDDQVCQRS QVEMQLVDFL VDLGTVSSMS 300 VDLWKLSKAP AWNLLVQSCS CEHWIISLYI LLERKFRKHP RYFFVFSTMG KNKIKHELIS 360 HEPNRRVTFK KRKANLFRKL TEITTLCGII ACAVVYDPSD SKMDAWPSPQ EAFYVLENFK 420 KLPEQRRGQF MMDQKAFLKK NISRLNGQLE RARFKNQALD AELLLIEYLE GLSSWKFLSP 480 MKLMLKLILM RWGIKANLVS LEGSSNKSSS K

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MIAGFLQIDT FSYEHANEVF NLLSQMQRLG VKPSTFTFSI ILRACKSVEA FEYGKQVHTQ  60
VCKYNLQGDE FIGSGLIDFY SSLGLFEDAL KCFNLTPRLD IVSWTSMVAA YIQNGETESA  120
FDLFYKLLAS GKKPDEFIIS SMLGACANLA AARSGEQIQG YAVKAGVGKF TIVQNSQICM  180
YAKSGDIDSA NLTFTETENP DVVSWSVMIC SKAQHGCARE ALELFELMKN CGIAPNHITF  240
LGVLTACSHG GLVEEGLRFA SSVHQFGLIC TPDDQVCQRS QVEMQLVDFL VDLGTVSSMS  300
VDLWKLSKAP AWNLLVQSCS CEHWIISLYI LLERKFRKHP RYFFVFSTMG KNKIKHELIS  360
HEPNRRVTFK KRKANLFRKL TEITTLCGII ACAVVYDPSD SKMDAWPSPQ EAFYVLENFK  420
KLPEQRRGQF MMDQKAFLKK NISRLNGQLE RARFKNQALD AELLLIEYLE GLSSWKFLSP  480
MKLMLKLILM RWGIKANLVS LEGSSNKSSS K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	373	RKFRKHPRYFFVFSTMGKNKIKHELISHEPNRRVTFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	2e-25	M-type_MADS family protein