PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g983280.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 457aa    MW: 50952.9 Da    PI: 6.4402
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g983280.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.44.1e-95854552374
              GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                       +e L+++A++++s++l+laq +L rl+++      + p g+p+qR+a yf  AL++ l++s s      + + +s+++ ++++ a+k+f  +s
  Pd.00g983280.m01  85 IEELIRAADCFDSDELQLAQGILDRLNQRlrssspSKPVGKPLQRAAVYFRDALQSILNGSDSA----AHNQLSSWSEIVQTIRAYKVFCGIS 173
                       679*************************9876433345679*******************4444....45555666669************** PP

              GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......eg.ppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                       P++ fsh+t+Nqa+le ++g+  +Hi+Dfdi+ G+Q+++L+++La+++      ++ p  lRiT+v+++e   + e++ ++e+L++fA+ l++
  Pd.00g983280.m01 174 PVPMFSHFTTNQALLEGLSGSAFIHIVDFDIGFGGQYASLMKELAEKAdvagrtSPvPQVLRITAVVPEE--YAGETRLVKENLSQFAQDLKI 264
                       **********************************************99776544344559********66..99999**************** PP

              GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyys 265
                       +f+ +++ ++++e +++++ ++  gE++aV l+  + r l    +++++++++L  +++lsP vvv+v+ +   d  ++sF + f+++le++s
  Pd.00g983280.m01 265 RFQVEFVPVRTFEIMSFKAVKFMDGEKTAVLLSPYILRRL----CSQNNISAFLGDMRRLSPSVVVFVDADgmGDSATTSFRRNFVSSLEFFS 353
                       *******99************************9999998....44444778*******************54455788************** PP

              GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                       ++++sl+a +++ se  +k+E +ll+++i+ +v ++g++       +  Wre+++ aG+++v+ls++a  qa++ll kv+++g++v +++++l
  Pd.00g983280.m01 354 VMLESLDAAAAASSEVVKKIETFLLRPKIQVAVEAAGRR-------VPPWREAFHGAGMRAVELSQFADFQAQCLLGKVQVRGFHVAKRQAEL 439
                       ******************************999999997.......99********************************************* PP

              GRAS 359 vlgWkdrpLvsvSaWr 374
                       vl+W+dr+Lv++SaWr
  Pd.00g983280.m01 440 VLCWHDRALVATSAWR 455
                       ***************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MRDLGLHDDS VPNLKTSIPQ LNSTDSQISH LSDYPNPQPF DPTQLVHSDF NINLSEVYST  60
QNFTNTTHNF YDHQPGNWNV GFDFIEELIR AADCFDSDEL QLAQGILDRL NQRLRSSSPS  120
KPVGKPLQRA AVYFRDALQS ILNGSDSAAH NQLSSWSEIV QTIRAYKVFC GISPVPMFSH  180
FTTNQALLEG LSGSAFIHIV DFDIGFGGQY ASLMKELAEK ADVAGRTSPV PQVLRITAVV  240
PEEYAGETRL VKENLSQFAQ DLKIRFQVEF VPVRTFEIMS FKAVKFMDGE KTAVLLSPYI  300
LRRLCSQNNI SAFLGDMRRL SPSVVVFVDA DGMGDSATTS FRRNFVSSLE FFSVMLESLD  360
AAAAASSEVV KKIETFLLRP KIQVAVEAAG RRVPPWREAF HGAGMRAVEL SQFADFQAQC  420
LLGKVQVRGF HVAKRQAELV LCWHDRALVA TSAWRCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-161GRAS family protein