PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g972220.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 462aa MW: 52443.4 Da PI: 9.6907

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g972220.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.4	9.4e-24	123	223	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ Pd.00g972220.m01 123 KWTDTMVRLLIMAVFYIGDEGGSEGtdptgkkksvggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVEN 215 7************999999965346677788999999********************************************55999999 PP trihelix 79 cpyfdqle 86 ++++++ Pd.00g972220.m01 216 QGLLEKMD 223 99999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MGSFPLSTAQ TKPAKLKPVA LLSVYSIYRF SFESLSHNTI HQQKQSSLLL FTSFFYAYVV 60 LLLHISAKAE KVFLIGAASG YGYPFATKSK QIALSDDDEP GFGADDNSNG DNKRKISPWQ 120 RMKWTDTMVR LLIMAVFYIG DEGGSEGTDP TGKKKSVGGL LQKKGKWKSV SRAMMEKGFY 180 VSPQQCEDKF NDLNKRYKRV NDILGKGTAC RVVENQGLLE KMDLSPKMKE EVRKLLNSKH 240 LFFREMCAYH NSCGHGTVGG VSNGAHNSPP EGATEPSEIT AHQQQPQQQR CFHSSENAHV 300 VANSGRGLMG HGPHEDDDDN DDRASLKRPR KEGCFSGPSS SQLTHQLGCE VRGVLQDVSK 360 SPWEKKQWLK TRLIQLEEQQ VNYQYQAFEL EKQRLKWIKF SGKKERDMER AKLENERRRL 420 ENERMLLLVR KKELELLELH HQQQQQQQNS SNKRSDPSSL TG

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MGSFPLSTAQ TKPAKLKPVA LLSVYSIYRF SFESLSHNTI HQQKQSSLLL FTSFFYAYVV  60
LLLHISAKAE KVFLIGAASG YGYPFATKSK QIALSDDDEP GFGADDNSNG DNKRKISPWQ  120
RMKWTDTMVR LLIMAVFYIG DEGGSEGTDP TGKKKSVGGL LQKKGKWKSV SRAMMEKGFY  180
VSPQQCEDKF NDLNKRYKRV NDILGKGTAC RVVENQGLLE KMDLSPKMKE EVRKLLNSKH  240
LFFREMCAYH NSCGHGTVGG VSNGAHNSPP EGATEPSEIT AHQQQPQQQR CFHSSENAHV  300
VANSGRGLMG HGPHEDDDDN DDRASLKRPR KEGCFSGPSS SQLTHQLGCE VRGVLQDVSK  360
SPWEKKQWLK TRLIQLEEQQ VNYQYQAFEL EKQRLKWIKF SGKKERDMER AKLENERRRL  420
ENERMLLLVR KKELELLELH HQQQQQQQNS SNKRSDPSSL TG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-95	Trihelix family protein