PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g966360.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 355aa MW: 39024.5 Da PI: 4.9324

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g966360.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.5	2.3e-07	18	59	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++++ + +C+ ++ +lC C ++H H++ Pd.00g966360.m01 18 RVCDTCQSAACTVYCRADSAYLCSGCDATIHAAnrvasrHER 59 79****99*******************55567777765 PP
2	zf-B_box	30.7	6.4e-10	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC C +H+ H++vp+ Pd.00g966360.m01 60 VWVCEACEQAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 105 689***************************668999999997 PP
3	CCT	70	6.2e-24	286	329	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Pd.00g966360.m01 286 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 329 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MLKEESNGAA ATNNNWARVC DTCQSAACTV YCRADSAYLC SGCDATIHAA NRVASRHERV 60 WVCEACEQAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG CLYGPRATDP 120 GGIVVGSAAA ETEDGFLSQE GDETIDEEDE DEAASWLLLN PMKNNNNCNN NNNQSNGFFF 180 GVEVDEYLDL VEYNSSCGDQ NRVVPVQMQK QSFHQLGLEY ESSKAAYSYN GSLSNTVSVS 240 SMDVGVVPDS TMSDISISHP RTPKGTIDLF SGPPIQMPSQ LSPLDREARV LRYREKKKTR 300 KFEKTIRYAS RKAYAETRPR IKGRFAKRTE MEVEVDQMFS TTLMAENGYG IVPSF

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MLKEESNGAA ATNNNWARVC DTCQSAACTV YCRADSAYLC SGCDATIHAA NRVASRHERV  60
WVCEACEQAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG CLYGPRATDP  120
GGIVVGSAAA ETEDGFLSQE GDETIDEEDE DEAASWLLLN PMKNNNNCNN NNNQSNGFFF  180
GVEVDEYLDL VEYNSSCGDQ NRVVPVQMQK QSFHQLGLEY ESSKAAYSYN GSLSNTVSVS  240
SMDVGVVPDS TMSDISISHP RTPKGTIDLF SGPPIQMPSQ LSPLDREARV LRYREKKKTR  300
KFEKTIRYAS RKAYAETRPR IKGRFAKRTE MEVEVDQMFS TTLMAENGYG IVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-123	CO-like family protein