PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g963620.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 456aa MW: 51964.1 Da PI: 6.9866

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g963620.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Pd.00g963620.m02 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	22.2	2.5e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ Pd.00g963620.m02 34 ICTFYQK-GACAFGSRCRYEHV 54 7****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ 60 SSGSSSSTNS RQSLAVDSLS MAHPSRTSSS GVALAPGILS ELSASSSPFL PPSKPAWNAG 120 NCPRGEKCPH IHGDICPSCG KHCLHPYRPM EREEHMKTCE EKQKQLEALK HSQEIECSVC 180 LERVLSKPTV AERKFGILSE CDHPFCVSCI RNWRSSSPTS GMDVNSALRA CPICRKLSYF 240 VIPSVIWYNT KEEKQEIIDS YKSRLRSIDC KHFDFGNGNC PFGTSCFYKH TVKPGSYVWK 300 FHRPPPRRPP PRRYDIVPMD VIFHMFEHLE EWDDYILEDL ENEDLNPLER EELLMQMGFD 360 TSDSSEDEID LWPHAYRDGS LEEVALRHLG NEDGQTVIAT NIRLSDFLAD LHIRIFLHQE 420 HMRSSHTGFS IASGILQWFE RIACLMVIQF LEKAYM

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSTNS RQSLAVDSLS MAHPSRTSSS GVALAPGILS ELSASSSPFL PPSKPAWNAG  120
NCPRGEKCPH IHGDICPSCG KHCLHPYRPM EREEHMKTCE EKQKQLEALK HSQEIECSVC  180
LERVLSKPTV AERKFGILSE CDHPFCVSCI RNWRSSSPTS GMDVNSALRA CPICRKLSYF  240
VIPSVIWYNT KEEKQEIIDS YKSRLRSIDC KHFDFGNGNC PFGTSCFYKH TVKPGSYVWK  300
FHRPPPRRPP PRRYDIVPMD VIFHMFEHLE EWDDYILEDL ENEDLNPLER EELLMQMGFD  360
TSDSSEDEID LWPHAYRDGS LEEVALRHLG NEDGQTVIAT NIRLSDFLAD LHIRIFLHQE  420
HMRSSHTGFS IASGILQWFE RIACLMVIQF LEKAYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-129	C3H family protein