PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g959160.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 702aa MW: 77044 Da PI: 6.2018

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g959160.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	303	323	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ GtCk+Gd C +aHg Pd.00g959160.m01 303 PCLDYRK-GTCKRGDLCEYAHG 323 6999*.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS FCSLLELAAD NDVEGFKQSI 60 SEASIVNEIG LWYGRDRALR RMVLEHRTPL MVASKYGSVD VVKLILSLSE ADANCSPCGD 120 KSTALHCAAS GGSENAVDTV KVLLLAGADP NAIDANGCCP FDVIVSPLNC SNLKVVLQEL 180 LQYDGSACQL DLHVSNVCCR SSSPFLSSSP KNASLPSSIP DSTCNSDDIH VSSAPEKKEY 240 PFDPSLPNIK NSIYATDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS 300 CMPCLDYRKG TCKRGDLCEY AHGVFECWLH PAQYKTRLCK DGMSCLRQVC FFAHKPEEMR 360 PVYVSTGSAM PSPHSATSAA AFMDMAAALN LLPGSPKAVQ AMLPSPFSPP ISPGNGISDS 420 CMAWPQKNIP SLHLPESNLR ASRLRSSLNA KDIPTEEVNL LHDFELQQQQ PLHDVSSFSQ 480 SYINISSVSR PLHPETLTPS NLNELFSAQV SSPRLIDHLV NSYAFSPSNK PAVRNQLQQQ 540 QTILSPIRTN AFSPRTFEQN LLQAPFDFST PRMMSHQSIE PLSPIGSRVS ALAQHEKQKL 600 QQLYSFSARD VGSNLPHELG SNGAVGSPVR SVSKWESANG ILDWSVQTDE LGHLTKFRSG 660 EHNVEEPDVS WVQSLVKESP YDVKEVASAP ESGTLLSMNC SN

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS FCSLLELAAD NDVEGFKQSI  60
SEASIVNEIG LWYGRDRALR RMVLEHRTPL MVASKYGSVD VVKLILSLSE ADANCSPCGD  120
KSTALHCAAS GGSENAVDTV KVLLLAGADP NAIDANGCCP FDVIVSPLNC SNLKVVLQEL  180
LQYDGSACQL DLHVSNVCCR SSSPFLSSSP KNASLPSSIP DSTCNSDDIH VSSAPEKKEY  240
PFDPSLPNIK NSIYATDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
CMPCLDYRKG TCKRGDLCEY AHGVFECWLH PAQYKTRLCK DGMSCLRQVC FFAHKPEEMR  360
PVYVSTGSAM PSPHSATSAA AFMDMAAALN LLPGSPKAVQ AMLPSPFSPP ISPGNGISDS  420
CMAWPQKNIP SLHLPESNLR ASRLRSSLNA KDIPTEEVNL LHDFELQQQQ PLHDVSSFSQ  480
SYINISSVSR PLHPETLTPS NLNELFSAQV SSPRLIDHLV NSYAFSPSNK PAVRNQLQQQ  540
QTILSPIRTN AFSPRTFEQN LLQAPFDFST PRMMSHQSIE PLSPIGSRVS ALAQHEKQKL  600
QQLYSFSARD VGSNLPHELG SNGAVGSPVR SVSKWESANG ILDWSVQTDE LGHLTKFRSG  660
EHNVEEPDVS WVQSLVKESP YDVKEVASAP ESGTLLSMNC SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein