PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g932600.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 98aa MW: 10924.2 Da PI: 4.5618 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 58.6 | 1.8e-18 | 6 | 80 | 27 | 101 |
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +f +h +FGa++++++l++lp +er a ++++eA+ ra dP yG+v+ il+lq+q+ + +a+l++++e+l Pd.00g932600.m01 6 ITDFSSIHNVFGANKMSRILSKLPMSERAVASWTMTFEAHPRAVDPTYGCVSYILDLQEQVLNIQAQLDEAHEQL 80 5789******************************************************************99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence |
MHEEAITDFS SIHNVFGANK MSRILSKLPM SERAVASWTM TFEAHPRAVD PTYGCVSYIL 60 DLQEQVLNIQ AQLDEAHEQL ARAVAPVANP NQDLENSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-25 | LBD family protein |