PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g930930.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 794aa MW: 87010.2 Da PI: 6.1931

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g930930.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	73	100	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r C++G+ C++aHg+ Pd.00g930930.m01 73 WKTSLCSYFRRESaSCSHGSGCRYAHGE 100 8*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence
MSSSSPTTEP SSVTSLLNPH SPLNGHDSTD QPQPTPPQDP ENQPQDDAVP GDKRKREENN 60 DDEPKPSVVP PLWKTSLCSY FRRESASCSH GSGCRYAHGE AELRPRPDNT WDPTSERAKK 120 QKNWKSEKLK DFLSEKAIQF KSAKKKKGMT LGFVSFQGVE QLQTAVKELD GISIGNKNIK 180 VADVIPRSFE KKTKSAMALP QNLQKTTEVE LEGENVEDSV VANGAEDGNG TSGRSARKVV 240 TPLAHMPYGD QLEHKKNSLM QILKRLTRNA RKACPDGILL PEWILKSREI GGLPCSLEGI 300 LASPVVNGYR NKCEFSVGYS LQGKITVGFM LGNFREGVTA VEEPFDCPNV SRISCKYASI 360 FQEFLQHSSL PVWNRFKNIG FWRQLTVREG RRPGMSSDAE NCEANIAEVM LIVQVSSTEF 420 DDAQITSDFE RLAQAFSAGA TASSPSLPLT ALVIQDHQGI SNAAPADAPL RSLSISKGEG 480 SSEMQATDNV VEAKIHDYIS NLRFCISPTA FFQVNTLAAE KLYSLAGDWA ELGPDTLLFD 540 VCCGTGTIGL TLAHHVGMVI GIEMNASAVS DACRNAEING ITNCRFVSAK AEDVMRSLLE 600 EYINAPQKQE NNVIEGIDEV VATDEEKPIS TDNKPNPEEN SIHELESGKT ASEGLETDKQ 660 ELRSQLQSSC TSENGNASVK RFSNVVAIVD PPRSGLHPTV IKALRTHPGL RKLVYISCNP 720 ESLVANAIEL CTPSPEKIEK NKNNRAWRNM SSAGLARHRA KSMPASEPFR PVKAMAVDLF 780 PHTIHCELVM LLER

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence

MSSSSPTTEP SSVTSLLNPH SPLNGHDSTD QPQPTPPQDP ENQPQDDAVP GDKRKREENN  60
DDEPKPSVVP PLWKTSLCSY FRRESASCSH GSGCRYAHGE AELRPRPDNT WDPTSERAKK  120
QKNWKSEKLK DFLSEKAIQF KSAKKKKGMT LGFVSFQGVE QLQTAVKELD GISIGNKNIK  180
VADVIPRSFE KKTKSAMALP QNLQKTTEVE LEGENVEDSV VANGAEDGNG TSGRSARKVV  240
TPLAHMPYGD QLEHKKNSLM QILKRLTRNA RKACPDGILL PEWILKSREI GGLPCSLEGI  300
LASPVVNGYR NKCEFSVGYS LQGKITVGFM LGNFREGVTA VEEPFDCPNV SRISCKYASI  360
FQEFLQHSSL PVWNRFKNIG FWRQLTVREG RRPGMSSDAE NCEANIAEVM LIVQVSSTEF  420
DDAQITSDFE RLAQAFSAGA TASSPSLPLT ALVIQDHQGI SNAAPADAPL RSLSISKGEG  480
SSEMQATDNV VEAKIHDYIS NLRFCISPTA FFQVNTLAAE KLYSLAGDWA ELGPDTLLFD  540
VCCGTGTIGL TLAHHVGMVI GIEMNASAVS DACRNAEING ITNCRFVSAK AEDVMRSLLE  600
EYINAPQKQE NNVIEGIDEV VATDEEKPIS TDNKPNPEEN SIHELESGKT ASEGLETDKQ  660
ELRSQLQSSC TSENGNASVK RFSNVVAIVD PPRSGLHPTV IKALRTHPGL RKLVYISCNP  720
ESLVANAIEL CTPSPEKIEK NKNNRAWRNM SSAGLARHRA KSMPASEPFR PVKAMAVDLF  780
PHTIHCELVM LLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein