PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g928730.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 438aa    MW: 49806 Da    PI: 6.2035
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g928730.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.81.2e-07104143645
                       HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF   6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                       k +++v+fskRr g++ K +  +   +ae+ ++++s+ g+
  Pd.00g928730.m01 104 KNRKYVSFSKRRSGLFSKGKDFCKKFEAEIGIVVLSEAGR 143
                       56899********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MRKMNQSINQ TLESEWKWVP RLVLRRKKGK ATNLIGGSAS ASARCGVDRF TACVFESWGM  60
KSGSREVSMH RNLCPVPPLY KHTNKMKRKA SEVTMEQKEA KLYKNRKYVS FSKRRSGLFS  120
KGKDFCKKFE AEIGIVVLSE AGRPYWSPDN PSLDADYSNK RMKGSHVLGK GKAKCVSTTP  180
SNLSFEDSVW VEPTSRHKDI CSSSTLKLDS EHDHRLGNNN GVRGGHDDGW FWDEILKDGY  240
TQGVLMEPIS KSEDVLYDST LNFESDRNVF DTHHGNINGG EGSSWCKDWE DGKAQCALMQ  300
PNLKSEEVLH NSTQNLESNR NVFTDQHGNN NDDDGTFWDR ILEYDKTHQL ASSEDVLFNS  360
TPNFECDRLN NKNDGGDNNI SLWDKILEES KSECVSFQPI SESEDFLYNP SLNFESDNRG  420
FDHYQGDNNG GGELWNYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.14e-08M-type_MADS family protein