PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g913550.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 207aa MW: 23421.5 Da PI: 8.8314

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g913550.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.4	2.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Pd.00g913550.m01 9 KRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	82.7	7.9e-28	63	126	37	100
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 h++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L kk++e Pd.00g913550.m01 63 HFMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKKVKE 126 99***********************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAQEISVLCD AEVALIVFST KGKLFEYSTD 60 SCHFMGEDLQ SLSLKELQNL EQQLDSALKH IRSRKNQVMY ESISELQKKD KALQEQNNLL 120 AKKVKEKEKA LAPQAQSWEQ QVQNQGLDCS STLLPETLQS LNFGSGSNYQ GIRSDGSGGD 180 HEDENETPTA NRPHTLLPPW MLRHLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	9e-65	MIKC_MADS family protein