PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g904910.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 597aa MW: 66647 Da PI: 7.2897

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g904910.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+ +v+++G g+W + +++ g+ R++k+c++rw++yl Pd.00g904910.m02 16 KGPWTPAEDQKLLAYVQKHGHGNWQSLPEKAGLQRCGKSCRLRWRNYL 63 79*********************************************7 PP
2	Myb_DNA-binding	46.2	1e-14	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +Ed+ +++++++lG++ W++I ++++ +Rt++++k++w++ Pd.00g904910.m02 69 RGNFSLQEDQTIIQLHALLGNR-WSAITAHLP-KRTDNEVKNYWHS 112 89******************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MGKSTHDCVA SSSVKKGPWT PAEDQKLLAY VQKHGHGNWQ SLPEKAGLQR CGKSCRLRWR 60 NYLRPDIKRG NFSLQEDQTI IQLHALLGNR WSAITAHLPK RTDNEVKNYW HSRLKKRLAL 120 KGYDPVTHKP KNTIFGFANG STDDPKTGSN LNHIAQWESV RLQAEARYVR DSELHKQAYH 180 PYNNNDISAA SSILSCYNKD FGQNAPQCLD MLRASEIILM SNYSKAAGGQ DHVNSFGNHL 240 TGDFEPPIIS AISSNGSSLI DCFFHELAGQ CFDENYGTSI TKPFAAVHHN MGFKNGACLE 300 DSGLWEIIMQ GKKDCPISGI THRFDQYSLQ EPASANPFVS ATKKCGVSVP SNSILAIAIQ 360 LNTRKFPGEV VSAMQLQDSG NLEYSEGMKL KSSRNRNNVS HYIEVQSGEL VLYAGYQTPQ 420 LYWSMADDSR KTNNNVSGKI HSLSLVSNSW NFNDSFQTQN DRSLIYSDRS PDENDRSPAA 480 NDRSQTTLPE SDRSHSSHDR SPRTSQRTIP TLPENDRSPD PHDRSLSPVF AEVVPLQSDP 540 SHHTQEERIE EFMPTPENSS APVPHQSSAE DVIQLKVVKG VHSAFTLEFD PNHSKLG

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MGKSTHDCVA SSSVKKGPWT PAEDQKLLAY VQKHGHGNWQ SLPEKAGLQR CGKSCRLRWR  60
NYLRPDIKRG NFSLQEDQTI IQLHALLGNR WSAITAHLPK RTDNEVKNYW HSRLKKRLAL  120
KGYDPVTHKP KNTIFGFANG STDDPKTGSN LNHIAQWESV RLQAEARYVR DSELHKQAYH  180
PYNNNDISAA SSILSCYNKD FGQNAPQCLD MLRASEIILM SNYSKAAGGQ DHVNSFGNHL  240
TGDFEPPIIS AISSNGSSLI DCFFHELAGQ CFDENYGTSI TKPFAAVHHN MGFKNGACLE  300
DSGLWEIIMQ GKKDCPISGI THRFDQYSLQ EPASANPFVS ATKKCGVSVP SNSILAIAIQ  360
LNTRKFPGEV VSAMQLQDSG NLEYSEGMKL KSSRNRNNVS HYIEVQSGEL VLYAGYQTPQ  420
LYWSMADDSR KTNNNVSGKI HSLSLVSNSW NFNDSFQTQN DRSLIYSDRS PDENDRSPAA  480
NDRSQTTLPE SDRSHSSHDR SPRTSQRTIP TLPENDRSPD PHDRSLSPVF AEVVPLQSDP  540
SHHTQEERIE EFMPTPENSS APVPHQSSAE DVIQLKVVKG VHSAFTLEFD PNHSKLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	1e-82	MYB family protein