PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g903390.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 914aa MW: 101191 Da PI: 5.1964

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g903390.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.6	2.7e-16	1	61	18	78
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +apyfpa++ ++f+n+ k+FG+sn++++++ + +++r++a++s++ e++ar +dPv+ + Pd.00g903390.m01 1 MAPYFPASRYSEFQNADKIFGVSNIQNTMAMAAPDQRQAAAESILTEGNARKNDPVHETSR 61 59******************************************************97655 PP

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence
MAPYFPASRY SEFQNADKIF GVSNIQNTMA MAAPDQRQAA AESILTEGNA RKNDPVHETS 60 RNTSKALSLS LSLAHRDLRL SVDCFRDLRF CKDERALVCF GDKQRFIGTA GAASSLMNPK 120 NTISQIKRLV GRQFSDPVVQ RDIKSLPFAV TEGPDGYPLI HARYLGESRT FTPTQVLGML 180 FSDLKIIAEK NLNAAVVDCC IGIPVYFTDL QRRAVLDAAT IAGLHPLRLF HETTATALAY 240 GIYKTDLPEN DQLNVAFVDI GHASMQVCIA GFKKGQLKIL AHSFDQSLGG RDFDEVLFHH 300 FAAKFKEEYK IDVFQNARAC LRLRVACEKL KKMLSANPEA PLNIECLMEE KDVRGFIKRD 360 EFEQISVPIL ERVKGPLEKA LLDAQLSIEN IHTVEVVGSG SRVPAIIKIL TDFFKKEPRR 420 TMNASECVAR GCALQCAILS PTFKVREFQV NESFPFSIAL SWKGSGPDTQ NGAADNNQST 480 IVFPKGNPIP SIKALTFYRS GTFSVDVQYA DVSDLQAPAK ISTYTIGPFQ STKGERAKLK 540 VKARLNLHGI VSVDSATLLE EEEIEVPVTK EQPKEGAKME TDEAPSNAAP PSSNETDVNM 600 QDAKGTADAS GAENGVPESG DKPVQMETDT KADAPKRKVK KTIIPVVELV YGGMPPSDVQ 660 KAIEKEFEMA LQDRVMEETK DKKNAVEAYV YDTRNKLNDK YQEFVTEPER EAFIARLQEV 720 EDWLYEDGED ETKGVYIAKL EELKKQGDPI EERYKEHTER GTVIDQLGYC INSYREAAMS 780 TDAKFEHIDI SDKQKVLNEC VEAEAWLREK KQQQDSLPKY ANPVLLSADV RRKAEALDRF 840 CRPIMTKPKP APAKPAAPET PTPPPQGNEH QPQGGDANAN AGSNENPADG SNEVPLASEE 900 PMETDKPEAP QSSA

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence

MAPYFPASRY SEFQNADKIF GVSNIQNTMA MAAPDQRQAA AESILTEGNA RKNDPVHETS  60
RNTSKALSLS LSLAHRDLRL SVDCFRDLRF CKDERALVCF GDKQRFIGTA GAASSLMNPK  120
NTISQIKRLV GRQFSDPVVQ RDIKSLPFAV TEGPDGYPLI HARYLGESRT FTPTQVLGML  180
FSDLKIIAEK NLNAAVVDCC IGIPVYFTDL QRRAVLDAAT IAGLHPLRLF HETTATALAY  240
GIYKTDLPEN DQLNVAFVDI GHASMQVCIA GFKKGQLKIL AHSFDQSLGG RDFDEVLFHH  300
FAAKFKEEYK IDVFQNARAC LRLRVACEKL KKMLSANPEA PLNIECLMEE KDVRGFIKRD  360
EFEQISVPIL ERVKGPLEKA LLDAQLSIEN IHTVEVVGSG SRVPAIIKIL TDFFKKEPRR  420
TMNASECVAR GCALQCAILS PTFKVREFQV NESFPFSIAL SWKGSGPDTQ NGAADNNQST  480
IVFPKGNPIP SIKALTFYRS GTFSVDVQYA DVSDLQAPAK ISTYTIGPFQ STKGERAKLK  540
VKARLNLHGI VSVDSATLLE EEEIEVPVTK EQPKEGAKME TDEAPSNAAP PSSNETDVNM  600
QDAKGTADAS GAENGVPESG DKPVQMETDT KADAPKRKVK KTIIPVVELV YGGMPPSDVQ  660
KAIEKEFEMA LQDRVMEETK DKKNAVEAYV YDTRNKLNDK YQEFVTEPER EAFIARLQEV  720
EDWLYEDGED ETKGVYIAKL EELKKQGDPI EERYKEHTER GTVIDQLGYC INSYREAAMS  780
TDAKFEHIDI SDKQKVLNEC VEAEAWLREK KQQQDSLPKY ANPVLLSADV RRKAEALDRF  840
CRPIMTKPKP APAKPAAPET PTPPPQGNEH QPQGGDANAN AGSNENPADG SNEVPLASEE  900
PMETDKPEAP QSSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	7e-08	LBD family protein