PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g889490.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 113aa MW: 13131.6 Da PI: 10.724 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.9e-19 | 13 | 53 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+++ r+vtf kR+ng++KKA+EL +LCd++v+ i++ ++ Pd.00g889490.m01 13 IQDDKARKVTFRKRKNGLFKKAFELTTLCDVKVCTIVYEKK 53 8999*********************************9765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence |
MGRRKTKLAL ELIQDDKARK VTFRKRKNGL FKKAFELTTL CDVKVCTIVY EKKSEGKLAP 60 PQTFPAKFEE VKEIIDKYKS NSSKIKKVQN LADFYATQTM QVKKEIVKLR TKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 2e-17 | M-type_MADS family protein |