PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g882400.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 442aa MW: 48194.3 Da PI: 8.3241

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g882400.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.1e-11	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Pd.00g882400.m01 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP
2	zf-CCCH	38.8	1.5e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Pd.00g882400.m01 98 QPECQYYLKTGTCKFGATCKFHHPR 122 799********************96 PP
3	zf-CCCH	34.7	2.9e-11	146	168	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++Ck++H++ Pd.00g882400.m01 146 ECAYYLRTGQCKFGSTCKYHHPQ 168 7********************97 PP
4	zf-CCCH	37.9	3e-12	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Pd.00g882400.m01 303 PGQPECQFYMKTGDCKFGAVCRFHHPR 329 5789*********************96 PP
5	zf-CCCH	40.1	5.9e-13	349	375	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Pd.00g882400.m01 349 PGEPLCIFYSRYGICKFGPSCKFDHPM 375 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWPMNLRSSE TLEPGSYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKAGIAGR VALNILGYPL RPNEIECAYY LRTGQCKFGS TCKYHHPQPT NMMVSLRGSP 180 VYPTVQSPTT PGQQSYAGGI TNWSRASFIP SPRWQAPSSY APLIVPQGVV SVPGWSAYSG 240 QIGSVSSPES QQQPVGNSQI YGTSRQGEPE NSGSQGTFSP YRSGSIPVGF YALQRENVFP 300 ERPGQPECQF YMKTGDCKFG AVCRFHHPRE RLIPAPDCVL SPIGLPLRPG EPLCIFYSRY 360 GICKFGPSCK FDHPMGIFTY NPNASSSADA PARRLLGSTS ATTSLNLSSE GLVEAGSANP 420 RRLSLSEPRQ IPSGDDNIDT ED

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWPMNLRSSE TLEPGSYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKAGIAGR VALNILGYPL RPNEIECAYY LRTGQCKFGS TCKYHHPQPT NMMVSLRGSP  180
VYPTVQSPTT PGQQSYAGGI TNWSRASFIP SPRWQAPSSY APLIVPQGVV SVPGWSAYSG  240
QIGSVSSPES QQQPVGNSQI YGTSRQGEPE NSGSQGTFSP YRSGSIPVGF YALQRENVFP  300
ERPGQPECQF YMKTGDCKFG AVCRFHHPRE RLIPAPDCVL SPIGLPLRPG EPLCIFYSRY  360
GICKFGPSCK FDHPMGIFTY NPNASSSADA PARRLLGSTS ATTSLNLSSE GLVEAGSANP  420
RRLSLSEPRQ IPSGDDNIDT ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein