PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g881730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 375aa MW: 42664.4 Da PI: 7.169

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g881730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.8e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Pd.00g881730.m01 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	22.5	1.9e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ Pd.00g881730.m01 34 ICTFYQK-GACAFGSRCRYEHV 54 7****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ 60 SSGSSSSTNS RQSLAVDSLS MAHPSRTSSS GVALAPGILS ELSASSSPFL PPSKPAWNGN 120 CPRGEKCPHI HGDICPSCGK HCLHPYRPME REEHMKTCEE KQKQLEALKH SQEIECSVCL 180 ERVLSKATVA ERKFGILSEC DHPFCVSCIR NWRSSSPTSG MDVNSALRAC PICRKLSYFV 240 IPSVIWYNTK EEKQEIIDSY KSRLRSIDCK HFDFGNGNCP FGTSCFYKHT VKPGSYVWKF 300 HRPPPRRPPP RRYDIVPMDV IFHMFEHLEE WDDYILEDLE NEDLNPLERE ELLMQMGFDT 360 SDSSEDEIDL WPVSY

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSTNS RQSLAVDSLS MAHPSRTSSS GVALAPGILS ELSASSSPFL PPSKPAWNGN  120
CPRGEKCPHI HGDICPSCGK HCLHPYRPME REEHMKTCEE KQKQLEALKH SQEIECSVCL  180
ERVLSKATVA ERKFGILSEC DHPFCVSCIR NWRSSSPTSG MDVNSALRAC PICRKLSYFV  240
IPSVIWYNTK EEKQEIIDSY KSRLRSIDCK HFDFGNGNCP FGTSCFYKHT VKPGSYVWKF  300
HRPPPRRPPP RRYDIVPMDV IFHMFEHLEE WDDYILEDLE NEDLNPLERE ELLMQMGFDT  360
SDSSEDEIDL WPVSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-131	C3H family protein