PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g878440.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25246.3 Da    PI: 5.143
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g878440.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.6e-241659851
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rqvtfskRr gi+KKA ELSvLC+ evav+ifs tgkl+++ss
  Pd.00g878440.m01 16 ARQVTFSKRRRGIFKKAAELSVLCESEVAVVIFSATGKLFDFSS 59
                      69****************************************96 PP
2K-box371.5e-13831671195
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       + + +  +++  kL ke+e+  r++R+++GedL+ L+l eL +Leq +e  l ++ ++K+el+++ i  l kk  el e+n+++ 
  Pd.00g878440.m01  83 SLELQLENENRIKLSKELEEKNRQLRQMKGEDLGLLDLDELLKLEQLVEATLVRVMETKEELIMSDIVALEKKGTELVEANNQMA 167
                       3344444555569999999999***********************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MMREKIKIKK IDYLPARQVT FSKRRRGIFK KAAELSVLCE SEVAVVIFSA TGKLFDFSSS  60
RIKDVIERYK MRTNGVEKSD EESLELQLEN ENRIKLSKEL EEKNRQLRQM KGEDLGLLDL  120
DELLKLEQLV EATLVRVMET KEELIMSDIV ALEKKGTELV EANNQMAMLR ERMVMLSKRN  180
TGPALVEPSE SATSTSCNSA LSLSLEDDCS DDVILSLKLG RP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.14e-47MIKC_MADS family protein