PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g878430.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 282aa MW: 30842 Da PI: 5.6972

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g878430.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75	6.1e-24	56	99	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr+gi+KKA ELSvLC+ +vav+ifs tgkl++yss Pd.00g878430.m01 56 ARQVTFSKRRTGIFKKAAELSVLCESKVAVVIFSATGKLFDYSS 99 69****************************************96 PP
2	K-box	41.5	5.7e-15	129	210	17	98
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ L ke+e+ +++R+++ edLe+L++ eLq+Leq ++ sl+++ ++K+el +++i l +k el e+n++Lr+ + Pd.00g878430.m01 129 ENENHIGLSKELEEKSHQLRQMKAEDLEELDFDELQKLEQLVDASLSRVIETKEELRMTEITALERKGAELVEANNQLRQTV 210 455555678888888899*************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MIRQAGPLAA AAISLSNSLR FSGHTKTSDL KLPNEGGILK MMRKKIKIKK IDCLPARQVT 60 FSKRRTGIFK KAAELSVLCE SKVAVVIFSA TGKLFDYSSS SIKDVIESYK AHKNGVEKSD 120 EPSVELQLEN ENHIGLSKEL EEKSHQLRQM KAEDLEELDF DELQKLEQLV DASLSRVIET 180 KEELRMTEIT ALERKGAELV EANNQLRQTV SNNHNHMVML SGGHTGPTLK DPESLSDKTG 240 GGGEEEGMSS ESAISTTCNS ALSLSLGDDS DDVTLSLKLG LP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	6e-47	MIKC_MADS family protein