PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g864660.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 290aa MW: 31950.7 Da PI: 6.6899 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.4 | 1.2e-08 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f t Ck+G rCkF+H++ Pd.00g864660.m01 54 PGEPDCPYFINTQRCKFGMRCKFNHPK 80 5789*********************96 PP | |||||||
2 | zf-CCCH | 37.1 | 5.2e-12 | 103 | 127 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ Pd.00g864660.m01 103 EPPCAFYLKMGQCKFGATCKFHHPK 127 79*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence |
MAPAQSAAAD AAATAGLSRV YTSPFPISSP AFPASNAPLK VPLFAPSEFL SERPGEPDCP 60 YFINTQRCKF GMRCKFNHPK DKLAAAVASE NSDVFALPER PSEPPCAFYL KMGQCKFGAT 120 CKFHHPKDIQ IPSAEQENKI GEIGTTIQLE GTGFAVKPPA LSFNSKELPV RLGEPDCPFY 180 LKTGSCKKVH TKFTEAWQGW EDYKPLHERI KEADCVMEGL DKAINILNSV VPVKTCSCTC 240 KLQSLRNADE GLLVHLQSLL NIEQEIQKAE EFNLPHNHVL FACQILIDNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 2e-52 | C3H family protein |