PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g862050.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 415aa    MW: 46486.7 Da    PI: 6.8541
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g862050.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.65.1e-1185165280
              GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                       +e L+++A++++s++l+laq +L rl+++      + p g+p+qR+a yf  AL++ l++s s   ++l++++    + ++++ a
  Pd.00g862050.m01  85 IEELIRAADCFDSDELQLAQGILDRLNQRlrssspSKPVGKPLQRAAVYFRDALQSILNGSDSAAHNQLSSWS----EIVQTIRA 165
                       679*************************9876433345679*******************6655555554443....35555555 PP
2GRAS1918e-59166413123374
              GRAS 123 lQWpaLlqaLasRp......eg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                        ++++L+++La+++      ++ p  lRiT+v+++e  ++ e++ ++e+L++fA+ l+++f+ +++ ++++e +++++ ++  gE++aV l+ 
  Pd.00g862050.m01 166 YKYASLMKELAEKAdvagrtSPvPQVLRITAVVPEE--HAGETRLVKENLSQFAQDLKIRFQVEFVPVRTFEIMSFKAVKFMDGEKTAVLLSP 256
                       579*********99776544344559********66..9999************************99************************9 PP

              GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                        + r l    +++++++++L  +++lsP vvv+v+ +   d  ++sF + f+++le++s++++sl+a +++ se  +k+E +ll+++i+ +v 
  Pd.00g862050.m01 257 YILRRL----CSQNNISAFLGDMRRLSPSVVVFVDADgmGDSATTSFRRNFVSSLEFFSVMLESLDAAAAASSEVVKKIETFLLRPKIQAAVE 345
                       999998....44444778*******************54455788************************************************ PP

              GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++g++       +  Wre+++ aG+++v+ls++a  qa++ll +v+++g++v +++++lvl+W+dr+Lv++SaWr
  Pd.00g862050.m01 346 AAGRR-------VPPWREAFHGAGMRAVELSQFADFQAQCLLGRVQVRGFHVAKRQAELVLCWHDRALVATSAWR 413
                       ***98.......99************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    
MRDLGLHDDS VPNLKTSIPQ LNSTDSQISH LSDYPNPQPF DPTQLVHSDF NINLSEVYST  60
QNFTNTTHNF YDHQPGNWNV GFDFIEELIR AADCFDSDEL QLAQGILDRL NQRLRSSSPS  120
KPVGKPLQRA AVYFRDALQS ILNGSDSAAH NQLSSWSEIV QTIRAYKYAS LMKELAEKAD  180
VAGRTSPVPQ VLRITAVVPE EHAGETRLVK ENLSQFAQDL KIRFQVEFVP VRTFEIMSFK  240
AVKFMDGEKT AVLLSPYILR RLCSQNNISA FLGDMRRLSP SVVVFVDADG MGDSATTSFR  300
RNFVSSLEFF SVMLESLDAA AAASSEVVKK IETFLLRPKI QAAVEAAGRR VPPWREAFHG  360
AGMRAVELSQ FADFQAQCLL GRVQVRGFHV AKRQAELVLC WHDRALVATS AWRCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-133GRAS family protein