PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g861010.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 661aa MW: 72829.1 Da PI: 7.233

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g861010.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.5	1.5e-24	85	186	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + Pd.00g861010.m01 85 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLISGDAVLFL--RG 174 99**************************963.3445679********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++++r+ Pd.00g861010.m01 175 DDGELRLGIRRA 186 89999**996 PP
2	Auxin_resp	118.7	4.9e-39	211	292	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k++F+++YnPras+seF+++ +k+++ l++++s+GmRfkm+feted++err++G+++g+s+ldpvrWp+SkWr+L Pd.00g861010.m01 211 VVNAISMKNAFNIFYNPRASSSEFIIPSRKFLRCLDHSFSPGMRFKMRFETEDAAERRYTGLITGISELDPVRWPGSKWRCL 292 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MASKVGHLEQ VSDFPASAYD LPPHLFCRVV DVKLHAETGT DDVYAQVSLV PESEEIEHKL 60 REGETDAYGE EDVEAIGKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQQR 120 PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLISGDAVL FLRGDDGELR 180 LGIRRAAQVK GCATYPTLCS QQLNYNTITD VVNAISMKNA FNIFYNPRAS SSEFIIPSRK 240 FLRCLDHSFS PGMRFKMRFE TEDAAERRYT GLITGISELD PVRWPGSKWR CLVVRWDDID 300 TSKHGRVSPW EIEPSGSVSS SHSLMAAGLK RARSGLSAAK TEFPVPNGIG ASDFGESLRF 360 QKVLQGQEIL GFDTHFGGLG GQNQHPSEPR RGFHGSSGSG IAAGGNGLRK SLADSEITST 420 GIGFGESFRF HKVLQGQEIF PSPPYGRAST NNEAHEYGGP GIYDGFQVPS FRNGWSAMMQ 480 SNNAHVHPSA SSVQVSSPSS VLMFQQAMNP GPEFNSVYNG HNQEEQRVIK RTPYVSESDG 540 GKQASSSFCE RSFSREDHGG MNSYNQRSIS NHPVISQSTF SGSQDAVSPY KGSCRLFGFS 600 LSEEKRVPDR ESNSTSTAST LNPGVQFHSK PALMTSAVGI TCTKEWAFDW RGERMESCLQ 660 G

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MASKVGHLEQ VSDFPASAYD LPPHLFCRVV DVKLHAETGT DDVYAQVSLV PESEEIEHKL  60
REGETDAYGE EDVEAIGKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQQR  120
PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLISGDAVL FLRGDDGELR  180
LGIRRAAQVK GCATYPTLCS QQLNYNTITD VVNAISMKNA FNIFYNPRAS SSEFIIPSRK  240
FLRCLDHSFS PGMRFKMRFE TEDAAERRYT GLITGISELD PVRWPGSKWR CLVVRWDDID  300
TSKHGRVSPW EIEPSGSVSS SHSLMAAGLK RARSGLSAAK TEFPVPNGIG ASDFGESLRF  360
QKVLQGQEIL GFDTHFGGLG GQNQHPSEPR RGFHGSSGSG IAAGGNGLRK SLADSEITST  420
GIGFGESFRF HKVLQGQEIF PSPPYGRAST NNEAHEYGGP GIYDGFQVPS FRNGWSAMMQ  480
SNNAHVHPSA SSVQVSSPSS VLMFQQAMNP GPEFNSVYNG HNQEEQRVIK RTPYVSESDG  540
GKQASSSFCE RSFSREDHGG MNSYNQRSIS NHPVISQSTF SGSQDAVSPY KGSCRLFGFS  600
LSEEKRVPDR ESNSTSTAST LNPGVQFHSK PALMTSAVGI TCTKEWAFDW RGERMESCLQ  660
G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein