PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g853840.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 843aa    MW: 94175.9 Da    PI: 6.9095
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g853840.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22160261199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + 
  Pd.00g853840.m01 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RG 249
                       99*****************************7333.34459************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+v+v+r+
  Pd.00g853840.m01 250 ENGELRVGVRRA 261
                       9999*****996 PP
2Auxin_resp114.87.6e-38286368183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha+ t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt++g++d+d+ rW++SkWrsLk
  Pd.00g853840.m01 286 AWHAILTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEDADTKRWRDSKWRSLK 368
                       79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MTSSEVSIKD NCGNQRGDSF SSSFSDHNDA RNNLEGQNSH PTVSAAGRDA ETALYTELWH  60
ACAGPLVTVP RERERVFYFP QGHIEQVEAS TNQVADQQMP VYNLPSKILC RVIHVQLKAE  120
PDTDEVFAQV TLLPEPSQDE NAVEKEPPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR  180
HADECLPPLD MSRQPPTQEL VAKDLHANEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA  240
GDAFIFLRGE NGELRVGVRR AMRQQGSAPS SVISSHSMHL GVLATAWHAI LTGTMFTVYY  300
KPRTSPAEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADTKRWR  360
DSKWRSLKVR WDETSTIPRP DRVSPWKIEP ALAPPALNPL PMPRPKRPRS NMVPSSPESI  420
LTREGSSKVT ADPAMPGGFS RVLQGQEFST LRGNFVDSES DTAEKSLAWT PSVDDEKIDV  480
VSASRRYGSE NWMPSGRHEP TYTDLLSGFG TNVDSSRGIC PPFVDQAVGN SMRKHSLDQE  540
GKFNLQSWSM LPSSLSLSLD SNLKGPPIGN RAYQAQGNAR YGGYSDYSVL NGHRVDHPQG  600
NWLMPPPPSH FENHANAREA MPQHASLQKQ EAVKPKDYKL FGIPLIAPEA ALSHRNAMIE  660
SPHHNQVHTF ESDQKSDKLR GTKPVENPLA VSEPDKLLQT SQQHVRDGQG KPQGGSTRSC  720
TKVHKQGIAL GRSVDLTKFN NYEELIAALD QLFEFDGELM APKKNWLIVY TDDEGDMMLV  780
GDDPWQEFCG IVRKIFIYTR EEVQKMNPGT LNSHGEENLS LVAEGLGLKI CRVLGGRLVT  840
VHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein