PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g848730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 306aa MW: 34392 Da PI: 4.2095 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.5 | 2.8e-30 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ara dP+yGa++ il+lq+q+ + +a Pd.00g848730.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQA 100 7*********************999856***************************************************************** PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g848730.m01 101 QLDEAHEQL 109 ****99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGANKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP IYGATSYILD LQEQVLNIQA QLDEAHEQLA CAIAPIADPN 120 QDLENSIEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VYNENMNLNY HVLNIQAQLD 180 EAHEQLARAV APVANPNQDR ENSNEQSEVA NPTEQAAVAK PTEFESLPQF SFTHTNNVDN 240 ENMNLNYHVS GSYKNTVNIP TENVADGWVN NEGTSSMSFF DMEWSFEDVD ELLVDPWFST 300 YISNIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-39 | LBD family protein |