PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g847930.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 249aa    MW: 29209 Da    PI: 6.3284
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g847930.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.5e-161253344
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      i n+  r+ tf kR++ i KKA ELS LC+++v++i++  ++
  Pd.00g847930.m01 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 53
                      779999*******************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MVAPRRRSLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC GIDVCLIVYE ADQKKGRAVQ  60
PETWPRDPTQ FKRILNKYKD SKDTSTPGLK RNFDMSDFYE DKKDHVDEDD EKFQNLGKKI  120
FEEEYPTKFQ NLGKKISEEE YPTKFQNLGK KISEEEYPTW DDRIDDFSQD ELTELIASLE  180
SKIQVATKKI DSMERYMGFA KKQNQSLVRE EINHDEQPYQ VPALMSPPSL VHYPMLPSAW  240
VSSSESEKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527RRRSLELIPNEGTRKMTFRKRKK
22327RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-20M-type_MADS family protein