PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g836080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 459aa MW: 50258.9 Da PI: 7.6024

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g836080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3.2e-17	140	189	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pd.00g836080.m01 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189 78*****************......55**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDE DSSTLNFLSP 60 NDVAADDNAH CDARTIQLFP LAQSVLSSSS SSSSSRKHWL GLSSNSGLEV EPSYYAPAEQ 120 IVPLQQRVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY 180 DRAAIKFRGT EADINFNVSD YEDDIKQMSN FTKEEFVHIL RRQSTGFSRG SSKYRGVTLH 240 KCGRWEARMG QFLGKKAYDK AAIKCNGREA VTNFEPNSYD GQIMSEAHNG GSDKSLDLNL 300 GIAPPLVSEL QKNNSNLSSF PVQLGCDDIP IHMRTRNENS APAPMRAQLS HGSMVASEEP 360 PIMSNINSSF FPIQVERATE KRMDVNSFPN WAWQLQGLNG GAPPMPLFSA AASSGFPSST 420 ATSPPAAVTQ LHFPNTTILH HHCSPSTVTT NIPGFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDE DSSTLNFLSP  60
NDVAADDNAH CDARTIQLFP LAQSVLSSSS SSSSSRKHWL GLSSNSGLEV EPSYYAPAEQ  120
IVPLQQRVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGT EADINFNVSD YEDDIKQMSN FTKEEFVHIL RRQSTGFSRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKAYDK AAIKCNGREA VTNFEPNSYD GQIMSEAHNG GSDKSLDLNL  300
GIAPPLVSEL QKNNSNLSSF PVQLGCDDIP IHMRTRNENS APAPMRAQLS HGSMVASEEP  360
PIMSNINSSF FPIQVERATE KRMDVNSFPN WAWQLQGLNG GAPPMPLFSA AASSGFPSST  420
ATSPPAAVTQ LHFPNTTILH HHCSPSTVTT NIPGFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	5e-89	AP2 family protein