PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g835540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 651aa MW: 71834.5 Da PI: 6.6353

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g835540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.5	1.3e-23	117	218	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + Pd.00g835540.m01 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--R 205 89**************************996555555..89*******************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ Pd.00g835540.m01 206 AENGDLCVGIRRA 218 488999**997 PP
2	Auxin_resp	114.4	1e-37	240	323	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+ Pd.00g835540.m01 240 AAALASKGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 323 67889*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MDSKEKLKEG EKCLDPQLWH ACAGGMVQMP PVNAKVFYFP QGHAEHACGP VDFRNCPRVP 60 PYIFCRVSAI KFMADPETDE VYAKIRLVPL SASEAGYEDD GIGGLNGSET PDKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPESSS GWNPTVFEAA 240 AALASKGQPF EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM 300 GTISSVQVAE PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP 360 RKKMRLPQHP DFPFEGELPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH GHYGLSLSDM 420 HLNKLQTGLF PAGFTPLDHA ATATKFSNNT MTQKPTMSEN VSCLLTMAHS TQTSKKPDDV 480 KPPQLVLFGQ PILTEQQISL SCSGDTVSPV LTGNSSSDGN AEKTANLSDN SVSALHQQSL 540 QERSYCEGFQ WYKDTRHETE PSLETGHCKV FMESEDVGRT LDLSVFGSYD ELYRKLADMF 600 GIENSETLNH VLYRDATGAV KHIGDEPLSD FMKTARRLTI LMDSGSNNVG M

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MDSKEKLKEG EKCLDPQLWH ACAGGMVQMP PVNAKVFYFP QGHAEHACGP VDFRNCPRVP  60
PYIFCRVSAI KFMADPETDE VYAKIRLVPL SASEAGYEDD GIGGLNGSET PDKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPESSS GWNPTVFEAA  240
AALASKGQPF EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM  300
GTISSVQVAE PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP  360
RKKMRLPQHP DFPFEGELPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH GHYGLSLSDM  420
HLNKLQTGLF PAGFTPLDHA ATATKFSNNT MTQKPTMSEN VSCLLTMAHS TQTSKKPDDV  480
KPPQLVLFGQ PILTEQQISL SCSGDTVSPV LTGNSSSDGN AEKTANLSDN SVSALHQQSL  540
QERSYCEGFQ WYKDTRHETE PSLETGHCKV FMESEDVGRT LDLSVFGSYD ELYRKLADMF  600
GIENSETLNH VLYRDATGAV KHIGDEPLSD FMKTARRLTI LMDSGSNNVG M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein