PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g833310.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 440aa    MW: 49223.6 Da    PI: 5.2239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g833310.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.12.1e-108594393374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       elLle A+a+++++ +++q+l++ l+el sp+gd+ q+l++yf++AL +r+++s++++y++l + ++++ + +++ +++  f+evsP+ +f+h
  Pd.00g833310.m01  59 ELLLETAKAIADKNSSRVQQLMWMLNELGSPYGDTDQKLTSYFLQALFSRMTDSGDRCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGH 151
                       69***********************************************************96655554444444444455************ PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvl 181
                       +++N aI+ea++ge ++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v++ +++        ++ ++e+g r++kfA+ +gvpf+fn++
  Pd.00g833310.m01 152 VACNGAIMEAFDGEPKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVATRASdgsggapAQKVMKEIGARMEKFARLMGVPFKFNAV 244
                       ****************************************************9987778999**999************************** PP

              GRAS 182 vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfd 269
                       +++ +l++l+l+eL+++ +EalaVn+v  lh++     +  ++rd ++++++sl+P+++++ve+ead++ +    +F+++f e+l+++ + f+
  Pd.00g833310.m01 245 HHSgDLSELNLSELDIRDDEALAVNCVGTLHSIQ----AGGNRRDYLVSAFRSLRPRIITLVEEEADLDVGvdgiEFVHGFQECLRWFRVYFE 333
                       8888*****************************8....55567899*******************9986555666****************** PP

              GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslv 359
                       +l+++++r+s+er ++Er+  gr++v++vac+ +e++er+et+++W++r++ aGF+pv++s+++ +++++llr++k +g+ +    e  + ++
  Pd.00g833310.m01 334 ALDESFARTSNERLMLERA-AGRAVVDLVACAPSESVERRETAARWSRRMHGAGFSPVTFSDEVCDDVRALLRRYK-EGWAMTqclEAGAGIF 424
                       *******************.********************************************************.6665554556777888 PP

              GRAS 360 lgWkdrpLvsvSaWr 374
                       l Wkd+p+v++SaWr
  Pd.00g833310.m01 425 LSWKDQPVVWASAWR 439
                       **************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MDEEDFSSSS SKHYYPSNHP TPPTPNPLLT TTTTPTPTDF SFSPALINFE LSNGKWAPEL  60
LLETAKAIAD KNSSRVQQLM WMLNELGSPY GDTDQKLTSY FLQALFSRMT DSGDRCYRTL  120
ISASEKTCSF ESTRKMVLKF QEVSPWTTFG HVACNGAIME AFDGEPKLHI IDISNTYCTQ  180
WPTLLEALAT RTDETPHLRL TTVVATRASD GSGGAPAQKV MKEIGARMEK FARLMGVPFK  240
FNAVHHSGDL SELNLSELDI RDDEALAVNC VGTLHSIQAG GNRRDYLVSA FRSLRPRIIT  300
LVEEEADLDV GVDGIEFVHG FQECLRWFRV YFEALDESFA RTSNERLMLE RAAGRAVVDL  360
VACAPSESVE RRETAARWSR RMHGAGFSPV TFSDEVCDDV RALLRRYKEG WAMTQCLEAG  420
AGIFLSWKDQ PVVWASAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein