PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g826430.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 1070aa MW: 117779 Da PI: 6.4685

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g826430.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.4e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ Pd.00g826430.m01 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RD 225 99***************************9445444.38********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ Pd.00g826430.m01 226 EKQQLLLGIRRA 237 88889**997 PP
2	Auxin_resp	116.4	2.4e-38	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+ Pd.00g826430.m01 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 345 79**************************9887766*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1070 aa Download sequence
MKPPANGAGA AAANGPSNSC EGGENVKIIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE 60 QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VSSFDKDALL 120 RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ 240 PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ 300 LSLGMRFRMM FETEESGTRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERRNRV 360 SMWEIEPVTA PFFIYPPPFF RSKRPRQPGM PDEESSDLDN LFKRTMPWFG DDMCMKDPQV 420 LPGLSLVQWM NMQQNSSAGN SIQPNYMHSF PGSALQNLAG ADLSRQLGMS GPQIPQLSNL 480 QFNAQRLPQQ AQQLDQLQKL PSTMNPLASM IQRQQQLGDI TQQPRQNSFN QSLPSSQVQS 540 QLLQPQTLSQ LPDQINQQLQ HLSDNQLQLQ LLQKLQQQQQ SLLTQQALQQ PAQLIQLQDQ 600 QRQLLDVSQS FSRPLTPTQM QEMPQMAPTS HPQSRTMPQQ LTKNNNSQTN VRFSQPPQQP 660 KLRQQQPIMV PEMSGHMGLL PTPTTNQLST AVSNVMTGGA GAGQSGITDE VPSCSNSPST 720 NNCPSLIQPL MNNRAHRNSL VGEDMAQSAT TILSPSAIET MPSNGNLLKD FQLKSDVKPS 780 VNIASNQSQG ILTAQTYLNS AAVQTDYLDT SSSTTSVGLS QNDVNLQQNN APLSFNPQPM 840 LFREASQEGE VQADHRNNVS YGSNIDGQLG IPLNPDPMLA KGTVGLGKGF SNNLSSGGMI 900 GNYENAKDAQ QELSSSMVSQ SFGVPDMAFN SIDSTINDSG FLDSGPWPPP PQFQRMRTYT 960 KVYKRGAVGR SIDIARYSGY GELKQDLARR FGIEGQLEDR GRVGWKLVYV DHESDVLLVG 1020 DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGGNAVLPNQ ACSSSDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1070 aa Download sequence

MKPPANGAGA AAANGPSNSC EGGENVKIIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VSSFDKDALL  120
RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SMWEIEPVTA PFFIYPPPFF RSKRPRQPGM PDEESSDLDN LFKRTMPWFG DDMCMKDPQV  420
LPGLSLVQWM NMQQNSSAGN SIQPNYMHSF PGSALQNLAG ADLSRQLGMS GPQIPQLSNL  480
QFNAQRLPQQ AQQLDQLQKL PSTMNPLASM IQRQQQLGDI TQQPRQNSFN QSLPSSQVQS  540
QLLQPQTLSQ LPDQINQQLQ HLSDNQLQLQ LLQKLQQQQQ SLLTQQALQQ PAQLIQLQDQ  600
QRQLLDVSQS FSRPLTPTQM QEMPQMAPTS HPQSRTMPQQ LTKNNNSQTN VRFSQPPQQP  660
KLRQQQPIMV PEMSGHMGLL PTPTTNQLST AVSNVMTGGA GAGQSGITDE VPSCSNSPST  720
NNCPSLIQPL MNNRAHRNSL VGEDMAQSAT TILSPSAIET MPSNGNLLKD FQLKSDVKPS  780
VNIASNQSQG ILTAQTYLNS AAVQTDYLDT SSSTTSVGLS QNDVNLQQNN APLSFNPQPM  840
LFREASQEGE VQADHRNNVS YGSNIDGQLG IPLNPDPMLA KGTVGLGKGF SNNLSSGGMI  900
GNYENAKDAQ QELSSSMVSQ SFGVPDMAFN SIDSTINDSG FLDSGPWPPP PQFQRMRTYT  960
KVYKRGAVGR SIDIARYSGY GELKQDLARR FGIEGQLEDR GRVGWKLVYV DHESDVLLVG  1020
DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGGNAVLPNQ ACSSSDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein