PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g821960.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 327aa    MW: 36973 Da    PI: 5.964
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g821960.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.58.4e-2497140851
                       HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        rqvtfskRr g++KKA ELSvLC+ evav+ifs tgkl++yss
  Pd.00g821960.m01  97 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATGKLFDYSS 140
                       69****************************************96 PP
2K-box44.56.6e-161652501297
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        + +  ++++ kL ke+e+  r++R+++G+d+e L+l eL +Leq +e sl ++ ++K+el++++i el +k  el e+n++Lr+ 
  Pd.00g821960.m01 165 IELQLENENHIKLSKELEEKSRQLRQMKGQDIEGLNLDELLKLEQLVEASLGRVMETKEELIKTEIMELERKGAELVEANNQLRQT 250
                       45566678889*************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MPHFLTSHIN GGDCIHQRQE HLSPSTCSLT LFPQKIIEEY IFPYKGKFIN HFISFLEQQP  60
DSSSSHFSVS FRTQTPKPPT KMMRNKIKIK KIDYLPARQV TFSKRRRGLF KKAAELSVLC  120
ESEVAVVIFS ATGKLFDYSS SSTKDVIERY NADMNGVEKS NNQVIELQLE NENHIKLSKE  180
LEEKSRQLRQ MKGQDIEGLN LDELLKLEQL VEASLGRVME TKEELIKTEI MELERKGAEL  240
VEANNQLRQT MVMLSRGNTG PALMDQERLN NNIEGGGEEE GMSAESAIST TCNSAVSLSL  300
EDDSSDEVTL SLKLGKLQLR NPNTERG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-46MIKC_MADS family protein