PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g820250.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25852.6 Da    PI: 9.8567
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g820250.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-312777151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fss+g+lyeys+
  Pd.00g820250.m01 27 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRLYEYSN 77
                      79***********************************************95 PP
2K-box82.78.3e-2897184592
             K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        ++s +e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++Ls+keL+qLe++Le+++++iRskK+  l ++   l+ k  e+++ ++
  Pd.00g820250.m01  97 GSTSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLSVKELKQLENRLERGINRIRSKKEIELENENVCLRTKISEVERLQQ 184
                       34558999***********************************************************************999988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MSEGSIEFIL LNVGLQIKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSILCDAE  60
VALIVFSSRG RLYEYSNNNS IRNTIERYKK ACSDSSGSTS ITEINAQYYQ QESAKLRQQI  120
QMLQNSNRHL MGDALSTLSV KELKQLENRL ERGINRIRSK KEIELENENV CLRTKISEVE  180
RLQQANMVGP ELNAIQALAS RNFFSQNMME GGATYPQQDK KILHLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.21e-112MIKC_MADS family protein