PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g809310.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 280aa MW: 31297 Da PI: 4.5204 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.8 | 2.7e-31 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er +a ++++eA+ara dP yG+v+ il+lq+q+ + +a Pd.00g809310.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGARKMSRILSMLPMSERAIASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQA 100 7*********************999856***************************************************************** PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g809310.m01 101 QLDEAHEQL 109 ****99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence |
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGARKM SRILSMLPMS 60 ERAIASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN 120 QDLENSNEQS EVANPTEQAA VTKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV 180 NIPTENVADG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW CPNMGKVQAL TASTPAADEW 240 LVTERAKAQW KKYKAMVDDA TLKTDISAFG FSCSPQETAG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 7e-42 | LBD family protein |