PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g787570.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 293aa MW: 32453.1 Da PI: 6.6751

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g787570.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.6	1.9e-24	86	129	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g787570.m02 86 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 129 69****************************************96 PP
2	K-box	36.3	2.3e-13	161	231	19	89
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K l+e ++l++++ +l++ Pd.00g787570.m02 161 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKGAELVEANNQLRQRMVMLSR 231 34457888888888***************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MPHFLTKSTV EIAFINFKCI CHCRFAQVSS LVFPKDTVRE AAISLSHSLS FSENTRTSDP 60 GTPQKGGMVK AMRKKIKIKK IDYLPARQVT FSKRRRGIFK KAEELSVLCE SEVAVVIFSA 120 TGKLFDYSSS STKDVVERYK AHTNGVEKSD EPSVELQLEI ENHIRLTKEL EEKSRQLRQM 180 RGEDLEELNI DELQKLEQLV DASLGRVIET KGAELVEANN QLRQRMVMLS RGNIGPALTE 240 PERLINNIGG GGEEGMSSES ATNATISSCS SGLSLSLEDD CSDVTLALKL GLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	4e-52	MIKC_MADS family protein