PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g787550.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 275aa MW: 30018.2 Da PI: 5.3027

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g787550.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.4	1.9e-23	56	99	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gilKKA ELSvLC+ +vav+ifs tgkl++yss Pd.00g787550.m02 56 ARQVTFSKRRRGILKKAAELSVLCESKVAVVIFSATGKLFDYSS 99 69****************************************96 PP
2	K-box	40.3	1.4e-14	129	209	17	97
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ L ke+e+ +++R+++ edLe+L++ eLq+Leq ++ sl+++ ++K+el +++i l +k el e+n++Lr+ Pd.00g787550.m02 129 ENENHIGLSKELEEKSHQLRQMKAEDLEELDFDELQKLEQLVDASLSRVIETKEELRMTEITALERKGAELVEANNQLRQT 209 445555678888888899*************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MIRQAGPLAA AAISLSNSLN FSGHTKTSDL KLPNEGGILK MMRKKIKIKK IDCLPARQVT 60 FSKRRRGILK KAAELSVLCE SKVAVVIFSA TGKLFDYSSS SIKDVIESYK AHKNGVEKSD 120 EPSVELQLEN ENHIGLSKEL EEKSHQLRQM KAEDLEELDF DELQKLEQLV DASLSRVIET 180 KEELRMTEIT ALERKGAELV EANNQLRQTM VMLSGGHTGP TLKDPESLSD KTGGGGEEEG 240 MSSESAISTT CNSALSLSLG DDSDDVTLSL KLGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	5e-47	MIKC_MADS family protein