PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g771440.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 584aa MW: 64799.6 Da PI: 6.2232

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g771440.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.8	7.7e-10	1	34	38	71
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkr 71 mre+gf rsp++C++kw+nl k++kk +++ k + Pd.00g771440.m01 1 MREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG 34 89*************************9988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGSRSAKM SAPXXXXASA AAYKSPTPPK 60 LESFVRFCDK GLEDSGIPFG PMEATDRSAL NLERQLDHDG DPLAITAADT VAVSGVPPWN 120 WREGPGNGGE GHSSYCGKII TVKLGEYTRR IGIDGTADAI KEAIKSAFRI RTKRAFWLED 180 EDQVVRSLDR DMPLGNYTLH LDEGITIKLC LYDDSDRIVR TEEITLYTED DFRDFLARRG 240 LMGLRELSGY RRIDTLDELQ SGAMYQGIGI FQMVLIWCYV GEGFGRIGRL VARVALQRDD 300 VELVAVNDPF INIEYMSYMF KYDSVHGQWK HHELKAKDDK TLLFGDKPVR VFASREPEGI 360 PWGEAGAEFV VESTGVFTDK EKASLHLKGG AKKVVISAPS KDAPMFVVGV NEKDYTPDLN 420 IVSNASCTTN CLAPLAKVVH DKFGIVEGLM TTVHSITATQ KTVDGPSMKD WRGGRAAATN 480 IIPSSTGAAK LTGMAFRVPT VDVSVVDLTV RLEKKATYDE IKDAIKKESE GSMKGILGYT 540 DEDVVSTDFV GDNRSSIFDA KAGIALNDNF VKLVSWYDNE WGYR

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGSRSAKM SAPXXXXASA AAYKSPTPPK  60
LESFVRFCDK GLEDSGIPFG PMEATDRSAL NLERQLDHDG DPLAITAADT VAVSGVPPWN  120
WREGPGNGGE GHSSYCGKII TVKLGEYTRR IGIDGTADAI KEAIKSAFRI RTKRAFWLED  180
EDQVVRSLDR DMPLGNYTLH LDEGITIKLC LYDDSDRIVR TEEITLYTED DFRDFLARRG  240
LMGLRELSGY RRIDTLDELQ SGAMYQGIGI FQMVLIWCYV GEGFGRIGRL VARVALQRDD  300
VELVAVNDPF INIEYMSYMF KYDSVHGQWK HHELKAKDDK TLLFGDKPVR VFASREPEGI  360
PWGEAGAEFV VESTGVFTDK EKASLHLKGG AKKVVISAPS KDAPMFVVGV NEKDYTPDLN  420
IVSNASCTTN CLAPLAKVVH DKFGIVEGLM TTVHSITATQ KTVDGPSMKD WRGGRAAATN  480
IIPSSTGAAK LTGMAFRVPT VDVSVVDLTV RLEKKATYDE IKDAIKKESE GSMKGILGYT  540
DEDVVSTDFV GDNRSSIFDA KAGIALNDNF VKLVSWYDNE WGYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-111	Trihelix family protein