PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g763330.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 17828.3 Da PI: 6.0819 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.4e-38 | 2 | 95 | 7 | 100 |
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la++++ Pd.00g763330.m01 2 ILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKAQA 94 68****************************************************************************************998 PP DUF260 100 e 100 e Pd.00g763330.m01 95 E 95 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence |
MILRRRCADK CVLAPYFPPT EPAKFTIAHR VFGASNIIKF LQDLPESQRA DAVSSMVYEA 60 SARIRDPVYG CAGAICHLQK QVNELQAQLA KAQAELVNMQ CQQANLVALI CMEMTQSNEQ 120 GSPQQSLDHN FIASSHGSNQ SNLSFLDDTT TLGSLWEPLW T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-63 | LBD family protein |