PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g759890.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 1309aa MW: 147108 Da PI: 8.6738

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g759890.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78.7	9.7e-25	986	1060	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g759890.m01 986 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 1060 689*****************************************************************9999875 PP
2	DUF260	124	7.6e-39	1114	1215	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l Pd.00g759890.m01 1114 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACL 1204 7***********************99*********************************************************** PP DUF260 91 kaelallkeel 101 +a+l ++k++l Pd.00g759890.m01 1205 QAQLMQVKAQL 1215 **9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1309 aa Download sequence
MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK 60 KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT 120 CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA 180 VRALVKKVPS NARGKKTEEQ EDKEFLQQST PKTSTKRRKD SGGDQQSKVA RSEGDVSTSW 240 DVSSRDATDL ESKLEAQTKE LWALKDDLKK HVTTAELREM LEANVQDSTG SELDLRERCA 300 DGMMFGALSR CPICSGFLRY SGGMYRCHGY ISEWSKCSYS TEEPERLKWK WKIPEDTDNQ 360 YLNKWFKSQK VEKPVRILPP STPNKPSLSQ AFNGQSQSSN SANLADLKVA FRGLPQESME 420 EWSRKIEGVA GLVHSKIKKD TNCLVVSGAL DDKDAEMRKA RRMKLPIVRE DYLVDCFKKQ 480 KKLPFDLYKV EVVGEASSMV TVKVKGRSAV HESSGLQDTC HILEDGKSIY NTTLSMSDLS 540 TGVNSYYILQ IIQDDKSSDC YVFRKWGRVG NDKIGGNKLE EMSKSDAICE FKRLFLEKTG 600 NSWEAWEQKQ HFQKQPGRFF PLDIDYGVNK QVSKKNQNNA ASKLAPPLAE LMKMLFNVET 660 YRAAMMEFEI NMSEMPLGKL SKSNIQKGFE ALTEIQNLLN SNGHAPSMKE SLIVDASNRF 720 FTVIPSIHPR VIRDEDDFKS KVKMLEALQD IEIASRLVGF DADTDDSLDE KYRKLRCDID 780 PIPHDSEDFR LIKKYLLTTH APTHTDWSLE LEEVFALERE GEFDKFAPYR KKLNNRMLLW 840 HGSRFTNFVG ILSQGLRIAP PEAPSTDKKN PVGLMLLSEV ALGEVHELKK ATYMDKPPKG 900 KHSTKGLGKK IPQESEYVKW KDDVIVPCGK PVPSNIKASE LMYNEYIVYD KAQVKMQFLL 960 KVRFHHKRKI PAGMPQGDKL QQFPGPARFA AIHKVFGASN VSKLLLHVPV HDRCEAVVTI 1020 AYEAQARIRD PVYGCVAHIF SLQQQVACLQ AQLMQVKAQL AHQSLVDSRN IESTQWPGNV 1080 NGVTNFPNYP ISYSLPNPKM ASGAGSNGSG TGSPCGACKF LRRKCASDCI FAPYFCSEQG 1140 PARFAAIHKV FGASNVSKLL LHVPVHDRCE AVVTIAYEAQ ARIRDPVYGC VAHIFSLQQQ 1200 VACLQAQLMQ VKAQLAHQSL VDSRNIESTQ WPGNVNGVTN FPNYPSYMNP ISPQSSLESI 1260 DHNCSDIAMN MQEIQSSRDD FSYQACSKRR PYNGDLGELQ ALALRMMRN

Sequence ? help Back to Top

Protein Sequence Length: 1309 aa Download sequence

MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK  60
KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT  120
CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA  180
VRALVKKVPS NARGKKTEEQ EDKEFLQQST PKTSTKRRKD SGGDQQSKVA RSEGDVSTSW  240
DVSSRDATDL ESKLEAQTKE LWALKDDLKK HVTTAELREM LEANVQDSTG SELDLRERCA  300
DGMMFGALSR CPICSGFLRY SGGMYRCHGY ISEWSKCSYS TEEPERLKWK WKIPEDTDNQ  360
YLNKWFKSQK VEKPVRILPP STPNKPSLSQ AFNGQSQSSN SANLADLKVA FRGLPQESME  420
EWSRKIEGVA GLVHSKIKKD TNCLVVSGAL DDKDAEMRKA RRMKLPIVRE DYLVDCFKKQ  480
KKLPFDLYKV EVVGEASSMV TVKVKGRSAV HESSGLQDTC HILEDGKSIY NTTLSMSDLS  540
TGVNSYYILQ IIQDDKSSDC YVFRKWGRVG NDKIGGNKLE EMSKSDAICE FKRLFLEKTG  600
NSWEAWEQKQ HFQKQPGRFF PLDIDYGVNK QVSKKNQNNA ASKLAPPLAE LMKMLFNVET  660
YRAAMMEFEI NMSEMPLGKL SKSNIQKGFE ALTEIQNLLN SNGHAPSMKE SLIVDASNRF  720
FTVIPSIHPR VIRDEDDFKS KVKMLEALQD IEIASRLVGF DADTDDSLDE KYRKLRCDID  780
PIPHDSEDFR LIKKYLLTTH APTHTDWSLE LEEVFALERE GEFDKFAPYR KKLNNRMLLW  840
HGSRFTNFVG ILSQGLRIAP PEAPSTDKKN PVGLMLLSEV ALGEVHELKK ATYMDKPPKG  900
KHSTKGLGKK IPQESEYVKW KDDVIVPCGK PVPSNIKASE LMYNEYIVYD KAQVKMQFLL  960
KVRFHHKRKI PAGMPQGDKL QQFPGPARFA AIHKVFGASN VSKLLLHVPV HDRCEAVVTI  1020
AYEAQARIRD PVYGCVAHIF SLQQQVACLQ AQLMQVKAQL AHQSLVDSRN IESTQWPGNV  1080
NGVTNFPNYP ISYSLPNPKM ASGAGSNGSG TGSPCGACKF LRRKCASDCI FAPYFCSEQG  1140
PARFAAIHKV FGASNVSKLL LHVPVHDRCE AVVTIAYEAQ ARIRDPVYGC VAHIFSLQQQ  1200
VACLQAQLMQ VKAQLAHQSL VDSRNIESTQ WPGNVNGVTN FPNYPSYMNP ISPQSSLESI  1260
DHNCSDIAMN MQEIQSSRDD FSYQACSKRR PYNGDLGELQ ALALRMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	8e-58	LBD family protein