PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g750040.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 302aa    MW: 33311.7 Da    PI: 4.2955
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g750040.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.3e-1233701350
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +++R  ++ K A+ELS+LCd+ v+v+ ++ + ++ +++
  Pd.00g750040.m01 33 LARRMSTLKKMASELSILCDVAVCVVAVGADSEIETWP 70
                      56788888888**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MAPPQLKSKK PKKMKPQVLK IDANGGSVLK PALARRMSTL KKMASELSIL CDVAVCVVAV  60
GADSEIETWP ENQQDAKSIL LKHKNLGKLG KKIEKGSFSA GKGTDYSFLD TMLEGLNESG  120
VVMMRDGGTK TRTTSTCSFM EFYENIMGTS VLPDPPDQLQ SMLLVDQVPH HQQEDYCTTN  180
SDGFYLEDLH IAAAAPTLSN IDDYVSWLLD DHNDIGLMED YIQFGDSDLA PLLESQEQQM  240
PLLQPAQMDT NNSDHLSWLL GGGDIGLMED YIQICDSDLA SPLDPQQQQQ QPPSLQLPQT  300
TY