PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g745820.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 373aa MW: 41426.9 Da PI: 6.3417 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24 | 8.2e-08 | 20 | 64 | 2 | 40 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r C+ +++ + l+C+ ++ lC +C e H+ Ht++ Pd.00g745820.m01 20 QKRLCDYCGSSMALLYCRADSAKLCFSCDREVHSAnqlfskHTRS 64 7899******99*********************667888888875 PP | |||||||
2 | zf-B_box | 29.3 | 1.7e-09 | 65 | 108 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ ++++fC++ ++ lC++C e+H + H+++pl Pd.00g745820.m01 65 LLCDACDGSPASIFCTTESSVLCQNCDWESH-NlssssvHDRRPL 108 57*****************************.5588888988775 PP | |||||||
3 | CCT | 63 | 9.5e-22 | 329 | 371 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k Pd.00g745820.m01 329 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 371 99***************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence |
MNGSSRNEEA EAPQPEREHQ KRLCDYCGSS MALLYCRADS AKLCFSCDRE VHSANQLFSK 60 HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL 120 LTVVGFENMD KKALLLSDES GGGGGGGDGF LGSGVDGSFD LDDGFSDLLV WDTPSVVSLD 180 DLINRNAACG RHKEEIFRQL RVLVKSEPNL FSENVDVKPL KSLASEQNMQ RGNLFTGFEH 240 DAEPTVFPAY EAHDFQYNDC GTAEKRESSP KTFIRSYLQE CCVVPDKHSH NDGSASHAND 300 GHGRGGQMNS EASSAFPKVA AHELSSQNRE TALSRYKEKK KTRRYEKHIR YESRKVRAES 360 RTRIKGRFAK MDH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 8e-72 | CO-like family protein |