PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g725670.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24625.5 Da PI: 4.5781 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.6 | 3e-26 | 8 | 101 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l+ lp +er a ++++e +ara dP+yG+v i q ql+++++ Pd.00g725670.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEVHARAVDPIYGCVLNI---QAQLDKAHE 97 7*********************999856*************************************************8655...555555555 PP DUF260 93 elal 96 +la+ Pd.00g725670.m01 98 QLAR 101 5554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS 60 ERAVASWTMT FEVHARAVDP IYGCVLNIQA QLDKAHEQLA RAVAPVANPN QDLENSNEQS 120 EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV NIPTENVADG 180 WVNNEGTSSM SFFDMEWSFE DVDELLVDPW FSTYISNIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 5e-36 | LBD family protein |