PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g705090.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 125aa MW: 14059.2 Da PI: 6.4943 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.5 | 3.3e-31 | 10 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ara dP+yGa++ il+lq+q+ + +a Pd.00g705090.m01 10 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERVVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQA 102 7*********************999856***************************************************************** PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g705090.m01 103 QLDEAHEQL 111 ****99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence |
MSSWTRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAN KMSRILSMLP 60 MSERVVASWT MTFEAHARAV DPIYGATSYI LDLQEQVLNI QAQLDEAHEQ LACAIAPVAD 120 PNQDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 9e-41 | LBD family protein |