PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g674060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 761aa MW: 84364 Da PI: 6.5461

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g674060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.4	4.7e-22	210	310	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +++a+++ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + Pd.00g674060.m01 210 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--R 298 99**************************964333..4459********************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Pd.00g674060.m01 299 GENGELRVGVRR 310 49999***97 PP
2	Auxin_resp	108.6	6.6e-36	336	418	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d + W nS+WrsLk Pd.00g674060.m01 336 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEAHSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVCDNTSPGWANSEWRSLK 418 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MADWERCSGF CRSGEYLGCG WRREKASVVG GFVGSCGCGE FGGSAGSSWL LGCLRFIPPA 60 HFSQLISSQE KASGVGEHLF SFAMTFSASN HPQGSSRIGM SGDALYKELW HACAGPLVSL 120 PREGERVYYF PQGHMEQLEA SMHQGSEQQM PSFNLPSKIL CKVVNVQLRA EPETDEVYAQ 180 VTLLPEADQS EITSPDPPLP ETPRCTVHSF CKTLTASDTS THGGFSVLRR HADDCLPPLD 240 MSQQPPWQEL VAADLHGNEW HFRHIFRGQP RRHLLTTGWS VFVSSKKLVA GDAFIFLRGE 300 NGELRVGVRR LMRQPSNMPS SVISSHSMHL GVLATASHAI ATGTLFSVFY KPRTSRSEFL 360 VSVNKYLEAH SHKLSVGMRF KMRFEGEEVP ERRFSGTIVG VCDNTSPGWA NSEWRSLKVQ 420 WDEPSSILRP DRVSPWELEP LVATTPLNSQ PALRNKRARP PVLPSPSPDL SALGEWKSQV 480 ESPSAFSYSD PQRGRDIYPS PKYNSASKAN SLCFTGNNSL AAVSVNSMFW SNRVDGVTEP 540 FSPITNKDSG ERRQGTGNGC RLFGIQLLEN SNVEESSPVV MVSGKLGDIR PISSFDAESD 600 QHSEPSNVNR SDLPSGSCDA EKSCLRSPQE SQSRQIRSCT KVHMQGIAVG RAVDLTRFER 660 YKDLLKKLEE MFDIEGELCG STKKWQVVYT DDEDDMMMVG DDPWHEFCSM VRKIFIYTIE 720 EVKRLSPKIK LTLNEEVKPG KPDSEAAVNT EDQSSIVGPA Y

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MADWERCSGF CRSGEYLGCG WRREKASVVG GFVGSCGCGE FGGSAGSSWL LGCLRFIPPA  60
HFSQLISSQE KASGVGEHLF SFAMTFSASN HPQGSSRIGM SGDALYKELW HACAGPLVSL  120
PREGERVYYF PQGHMEQLEA SMHQGSEQQM PSFNLPSKIL CKVVNVQLRA EPETDEVYAQ  180
VTLLPEADQS EITSPDPPLP ETPRCTVHSF CKTLTASDTS THGGFSVLRR HADDCLPPLD  240
MSQQPPWQEL VAADLHGNEW HFRHIFRGQP RRHLLTTGWS VFVSSKKLVA GDAFIFLRGE  300
NGELRVGVRR LMRQPSNMPS SVISSHSMHL GVLATASHAI ATGTLFSVFY KPRTSRSEFL  360
VSVNKYLEAH SHKLSVGMRF KMRFEGEEVP ERRFSGTIVG VCDNTSPGWA NSEWRSLKVQ  420
WDEPSSILRP DRVSPWELEP LVATTPLNSQ PALRNKRARP PVLPSPSPDL SALGEWKSQV  480
ESPSAFSYSD PQRGRDIYPS PKYNSASKAN SLCFTGNNSL AAVSVNSMFW SNRVDGVTEP  540
FSPITNKDSG ERRQGTGNGC RLFGIQLLEN SNVEESSPVV MVSGKLGDIR PISSFDAESD  600
QHSEPSNVNR SDLPSGSCDA EKSCLRSPQE SQSRQIRSCT KVHMQGIAVG RAVDLTRFER  660
YKDLLKKLEE MFDIEGELCG STKKWQVVYT DDEDDMMMVG DDPWHEFCSM VRKIFIYTIE  720
EVKRLSPKIK LTLNEEVKPG KPDSEAAVNT EDQSSIVGPA Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein