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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pd.00g660290.m01 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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| Family | GeBP | ||||||||
| Protein Properties | Length: 264aa MW: 31148.1 Da PI: 9.1666 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 89.1 | 5.2e-28 | 48 | 148 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkif 89
+r+ws+eDe+ lL+ l+d ++g+ ++d+ fye vk +++++ ++ q+veK+rrLKkK+++ v+k ++gke++f+++hd+ +f
Pd.00g660290.m01 48 RKRVWSKEDELELLRSLLDDYYSRGQirTTVKDTASFYEEVKPKLKLECNRVQMVEKLRRLKKKYHNVVNKmndmNSTGKEFRFKNPHDKVVF 140
58*****************9999999877888************************************9998887789*************** PP
DUF573 90 elskkiWg 97
els kiW+
Pd.00g660290.m01 141 ELSDKIWN 148
*******7 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 264 aa Download sequence |
MNPTTTTTLK IWEELMMSPT TAKRRRIDRT YEPALTSEEP EENKKRRRKR VWSKEDELEL 60 LRSLLDDYYS RGQIRTTVKD TASFYEEVKP KLKLECNRVQ MVEKLRRLKK KYHNVVNKMN 120 DMNSTGKEFR FKNPHDKVVF ELSDKIWNVV DSHEDYAPNS KYVSICNNNK VKKEEDNVGS 180 SSVADHEQPQ MRHAWSHSRL TTTYDENNKA HDVLNDNGTT GIEVADEKWR KQQILELEAY 240 SKRLNLVQHQ VKAAMDELRS NGVE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 23 | 27 | KRRRI |
| 2 | 23 | 49 | KRRRIDRTYEPALTSEEPEENKKRRRK |
| 3 | 43 | 50 | NKKRRRKR |
| 4 | 44 | 49 | KKRRRK |
| 5 | 44 | 50 | KKRRRKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G04930.2 | 2e-21 | GeBP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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